Search for any model, metabolite or reaction by BiGG ID or name.

To search for entries linked to external identifiers, use the format [namespace]:[identifier]. Possible namespaces are: (auto indicates the the enitity type is automatically derived from the identifier.)

  • CHEBI
    • Ex: CHEBI:17790
  • RHEA
    • Ex: RHEA:16505
  • InChIKey
    • The rightmost two parts of the InChIKey can optionally be omitted to search for compounds with different protonation states and different stereochemistries.
    • Ex: InChiKey:ZKHQWZAMYRWXGA-KQYNXXCUSA-J, InChiKey:ZKHQWZAMYRWXGA-KQYNXXCUSA, InChiKey:ZKHQWZAMYRWXGA-
  • EC / ec-code
    • Partial EC-codes can be provided, optionally with an asterix at the end.
    • Ex: ec-code:4.1.3.27, EC:4.1.3.*,
  • seed (auto), seed.compound, seed.reaction
    • Identifiers can also be entered directly.
    • Ex: cpd00023, seed:cpd00023, seed.reaction:rxn00126
  • kegg (auto), kegg.compound, kegg.reaction
    • Ex: kegg.compound:C00062, kegg:R01086
  • metacyc (auto), metacyc.compound, metacyc.reaction
    • Ex: metacyc:VAL, metacyc:BRANCHED-CHAINAMINOTRANSFERVAL-RXN
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    • Identifiers can also be entered directly.
    • Ex: metanetx:MNXR100289, MNXR100289

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  3. GCF_000406345_2_json
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  5. JCPNDEAL_02450
Gene
JCPNDEAL_02450
  • Model: GCF_000406345_2_json
Associated reactions
  BiGG ID Name Gene reaction rule
__LactoPanGEM__GLNabc L-glutamine transport via ABC system JCPNDEAL_10260 or JCPNDEAL_02450 or JCPNDEAL_06850 or JCPNDEAL_06600 or JCPNDEAL_01960 or JCPNDEAL_06610 or JCPNDEAL_10250 or JCPNDEAL_10230 or JCPNDEAL_06590 or JCPNDEAL_04770 or JCPNDEAL_06580 or JCPNDEAL_06570 or JCPNDEAL_10240
__LactoPanGEM__METabc L-methionine transport via ABC system JCPNDEAL_09910 or JCPNDEAL_03780 or JCPNDEAL_02450 or JCPNDEAL_09900 or JCPNDEAL_09920
__LactoPanGEM__METDabc D-methionine transport via ABC system JCPNDEAL_09910 or JCPNDEAL_03780 or JCPNDEAL_02450 or JCPNDEAL_09900 or JCPNDEAL_09920
__LactoPanGEM__METSabc L methionine S oxide transport via ABC system JCPNDEAL_09910 or JCPNDEAL_03780 or JCPNDEAL_02450 or JCPNDEAL_09900 or JCPNDEAL_09920
__LactoPanGEM__METSRabc L methionine R oxide transport via ABC system JCPNDEAL_09910 or JCPNDEAL_03780 or JCPNDEAL_02450 or JCPNDEAL_09900 or JCPNDEAL_09920