O2Stex in 2049486_3_json
- superoxide anion transport via diffusion (extracellular to periplasm)
- o2s_e:-1 ⇌ o2s_p:-1
- Bounds: (-1000.0, 1000.0)
- Universal Reaction: O2Stex
Properties
- Names: superoxide anion transport via diffusion (extracellular to periplasm)[0], superoxide anion transport via diffusion[0,1,2,3,4], TRANS-RXNBWI-115401.ce.maizeexp.SUPER-OXIDE_SUPER-OXIDE[1], TRANS-RXNBWI-115401.cm.maizeexp.SUPER-OXIDE_SUPER-OXIDE[2], -[3,4]
Reaction Participants
| Stoich. | BiGG ID | Name | Reference | x [side] | Compartment | |
|---|---|---|---|---|---|---|
 |
-1 | o2s_e:-1 | superoxide | CHEBI:18421 | - | - |
 |
1 | o2s_p:-1 | superoxide | CHEBI:18421 | - | - |
Gene Reaction Rule
LDLPIDKH_04013 or LDLPIDKH_04583 or LDLPIDKH_02261 or LDLPIDKH_02969
| BiGG ID | Name | |
|---|---|---|
 |
LDLPIDKH_02969 | None |
|
LDLPIDKH_04013 | None |
|
LDLPIDKH_04583 | None |
|
LDLPIDKH_02261 | None |
MEMOTE Flags
This reaction was flagged in the following MEMOTE tests:
There are a total of 5 reversible oxygen-containing reactions (9.80% of all oxygen-containing reactions): O2Stex, EX_o2_e, O2tex, INOSTO, O2tpp
The directionality of oxygen-producing/-consuming reactions affects the model's ability to grow anaerobically i.e. create faux-anaerobic organisms. This test reports how many of these oxygen-containing reactions are reversible. This test does not have any mandatory 'pass' criteria. Implementation: First, find the metabolite representing atmospheric oxygen in the model on the basis of an internal mapping table or by specifically looking for the formula "O2". Then, find all reactions that produce or consume oxygen and report those that are reversible.