Search for any model, metabolite or reaction by BiGG ID or name.

To search for entries linked to external identifiers, use the format [namespace]:[identifier]. Possible namespaces are: (auto indicates the the enitity type is automatically derived from the identifier.)

  • CHEBI
    • Ex: CHEBI:17790
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    • Ex: RHEA:16505
  • InChIKey
    • The rightmost two parts of the InChIKey can optionally be omitted to search for compounds with different protonation states and different stereochemistries.
    • Ex: InChiKey:ZKHQWZAMYRWXGA-KQYNXXCUSA-J, InChiKey:ZKHQWZAMYRWXGA-KQYNXXCUSA, InChiKey:ZKHQWZAMYRWXGA-
  • EC / ec-code
    • Partial EC-codes can be provided, optionally with an asterix at the end.
    • Ex: ec-code:4.1.3.27, EC:4.1.3.*,
  • seed (auto), seed.compound, seed.reaction
    • Identifiers can also be entered directly.
    • Ex: cpd00023, seed:cpd00023, seed.reaction:rxn00126
  • kegg (auto), kegg.compound, kegg.reaction
    • Ex: kegg.compound:C00062, kegg:R01086
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    • Ex: metacyc:VAL, metacyc:BRANCHED-CHAINAMINOTRANSFERVAL-RXN
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    • Identifiers can also be entered directly.
    • Ex: metanetx:MNXR100289, MNXR100289

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  3. 340184_27_json
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  5. KPDENIBA_04229
Gene
KPDENIBA_04229
  • Model: 340184_27_json
Associated reactions
  BiGG ID Name Gene reaction rule
FHL Formate-hydrogen lyase (KPDENIBA_02694 and (KPDENIBA_04450 and KPDENIBA_04452 and KPDENIBA_04454 and KPDENIBA_04459 and KPDENIBA_04458 and KPDENIBA_04453 and KPDENIBA_04449 and KPDENIBA_04451 and KPDENIBA_04455 and KPDENIBA_04461)) or (KPDENIBA_02694 and (KPDENIBA_04230 and KPDENIBA_04229 and KPDENIBA_04228 and KPDENIBA_04232 and KPDENIBA_04231 and KPDENIBA_04233))
HYD1pp hydrogenase (ubiquinone-8: 2 protons) (periplasm) (KPDENIBA_00105 and KPDENIBA_00106 and KPDENIBA_00104) or (KPDENIBA_03869 and KPDENIBA_03866 and KPDENIBA_03867 and KPDENIBA_03868) or (KPDENIBA_04230 and KPDENIBA_04229 and KPDENIBA_04228 and KPDENIBA_04232 and KPDENIBA_04231 and KPDENIBA_04233)