Search for any model, metabolite or reaction by BiGG ID or name.

To search for entries linked to external identifiers, use the format [namespace]:[identifier]. Possible namespaces are: (auto indicates the the enitity type is automatically derived from the identifier.)

  • CHEBI
    • Ex: CHEBI:17790
  • RHEA
    • Ex: RHEA:16505
  • InChIKey
    • The rightmost two parts of the InChIKey can optionally be omitted to search for compounds with different protonation states and different stereochemistries.
    • Ex: InChiKey:ZKHQWZAMYRWXGA-KQYNXXCUSA-J, InChiKey:ZKHQWZAMYRWXGA-KQYNXXCUSA, InChiKey:ZKHQWZAMYRWXGA-
  • EC / ec-code
    • Partial EC-codes can be provided, optionally with an asterix at the end.
    • Ex: ec-code:4.1.3.27, EC:4.1.3.*,
  • seed (auto), seed.compound, seed.reaction
    • Identifiers can also be entered directly.
    • Ex: cpd00023, seed:cpd00023, seed.reaction:rxn00126
  • kegg (auto), kegg.compound, kegg.reaction
    • Ex: kegg.compound:C00062, kegg:R01086
  • metacyc (auto), metacyc.compound, metacyc.reaction
    • Ex: metacyc:VAL, metacyc:BRANCHED-CHAINAMINOTRANSFERVAL-RXN
  • metanetx (auto), metanetx.chemical, metanetx.reaction
    • Identifiers can also be entered directly.
    • Ex: metanetx:MNXR100289, MNXR100289

BiGGr
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  3. 562_13756_json
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  5. JFMIPEGJ_00541
Gene
JFMIPEGJ_00541
  • Model: 562_13756_json
Associated reactions
  BiGG ID Name Gene reaction rule
NTD2 5'-nucleotidase (UMP) JFMIPEGJ_03013 or JFMIPEGJ_01277 or JFMIPEGJ_00541
NTD4 5'-nucleotidase (CMP) JFMIPEGJ_03013 or JFMIPEGJ_00541
PYDXPP Pyridoxal 5-phosphate phosphatase JFMIPEGJ_00787 or JFMIPEGJ_01867 or JFMIPEGJ_00440 or JFMIPEGJ_00541
G3PT glycerol-3-phosphatase JFMIPEGJ_00379 or JFMIPEGJ_00541
NTD9 5'-nucleotidase (GMP) JFMIPEGJ_03013 or JFMIPEGJ_02308 or JFMIPEGJ_00701 or JFMIPEGJ_00541
NTD7 5'-nucleotidase (AMP) JFMIPEGJ_03013 or JFMIPEGJ_00701 or JFMIPEGJ_02308 or JFMIPEGJ_00541
R5PP ribose 5-phosphate phosphatase JFMIPEGJ_00379 or JFMIPEGJ_03071 or JFMIPEGJ_00541 or JFMIPEGJ_03432 or JFMIPEGJ_01996