Search for any model, metabolite or reaction by BiGG ID or name.

To search for entries linked to external identifiers, use the format [namespace]:[identifier]. Possible namespaces are: (auto indicates the the enitity type is automatically derived from the identifier.)

  • CHEBI
    • Ex: CHEBI:17790
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    • Ex: RHEA:16505
  • InChIKey
    • The rightmost two parts of the InChIKey can optionally be omitted to search for compounds with different protonation states and different stereochemistries.
    • Ex: InChiKey:ZKHQWZAMYRWXGA-KQYNXXCUSA-J, InChiKey:ZKHQWZAMYRWXGA-KQYNXXCUSA, InChiKey:ZKHQWZAMYRWXGA-
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    • Partial EC-codes can be provided, optionally with an asterix at the end.
    • Ex: ec-code:4.1.3.27, EC:4.1.3.*,
  • seed (auto), seed.compound, seed.reaction
    • Identifiers can also be entered directly.
    • Ex: cpd00023, seed:cpd00023, seed.reaction:rxn00126
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    • Ex: kegg.compound:C00062, kegg:R01086
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    • Identifiers can also be entered directly.
    • Ex: metanetx:MNXR100289, MNXR100289

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  3. 562_16465_json
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  5. MAGCMMLK_02856
Gene
MAGCMMLK_02856
  • Model: 562_16465_json
Associated reactions
  BiGG ID Name Gene reaction rule
PTRCabcpp putrescine transport via ABC system (periplasm) (MAGCMMLK_02196 and MAGCMMLK_02197 and MAGCMMLK_02199 and MAGCMMLK_02198) or (MAGCMMLK_02855 and MAGCMMLK_02857 and MAGCMMLK_02856 and MAGCMMLK_02858) or (MAGCMMLK_02519 and MAGCMMLK_02520 and MAGCMMLK_02458 and MAGCMMLK_02457)
SPMDabcpp spermidine transport via ABC system (periplasm) (MAGCMMLK_02457 and MAGCMMLK_02519 and MAGCMMLK_02458 and MAGCMMLK_02520) or (MAGCMMLK_02858 and MAGCMMLK_02857 and MAGCMMLK_02856 and MAGCMMLK_02855)