Search for any model, metabolite or reaction by BiGG ID or name.

To search for entries linked to external identifiers, use the format [namespace]:[identifier]. Possible namespaces are: (auto indicates the the enitity type is automatically derived from the identifier.)

  • CHEBI
    • Ex: CHEBI:17790
  • RHEA
    • Ex: RHEA:16505
  • InChIKey
    • The rightmost two parts of the InChIKey can optionally be omitted to search for compounds with different protonation states and different stereochemistries.
    • Ex: InChiKey:ZKHQWZAMYRWXGA-KQYNXXCUSA-J, InChiKey:ZKHQWZAMYRWXGA-KQYNXXCUSA, InChiKey:ZKHQWZAMYRWXGA-
  • EC / ec-code
    • Partial EC-codes can be provided, optionally with an asterix at the end.
    • Ex: ec-code:4.1.3.27, EC:4.1.3.*,
  • seed (auto), seed.compound, seed.reaction
    • Identifiers can also be entered directly.
    • Ex: cpd00023, seed:cpd00023, seed.reaction:rxn00126
  • kegg (auto), kegg.compound, kegg.reaction
    • Ex: kegg.compound:C00062, kegg:R01086
  • metacyc (auto), metacyc.compound, metacyc.reaction
    • Ex: metacyc:VAL, metacyc:BRANCHED-CHAINAMINOTRANSFERVAL-RXN
  • metanetx (auto), metanetx.chemical, metanetx.reaction
    • Identifiers can also be entered directly.
    • Ex: metanetx:MNXR100289, MNXR100289

BiGGr
  • Home
  • About
  • Data Access
  1. Home
  2. Models
  3. 562_30436_json
  4. Genes
  5. GAP
Gene
GAP
  • Model: 562_30436_json
Associated reactions
  BiGG ID Name Gene reaction rule
FEENTERtex enterochelin transport (secretion periplasm) GAP
INDOLEt2pp Indole transport via proton symport, irreversible (periplasm) GAP
GALTptspp Galactitol transport via PEP:Pyr PTS (periplasm) GAP
AMAOTr adenosylmethionine-8-amino-7-oxononanoate transaminase GAP
NADHPO NADH peroxidase GAP
CMtpp Chloramphenicol transport via TolC system GAP
__Ecoli_panGEMs__FUSAtpp Fusidic acid transport via TolC system GAP
MINCYCtpp Minocycline transport via TolC system GAP
DOXRBCNtpp Doxorubicin transport via TolC system GAP
NOVBCNtpp Novobiocin transport via TolC system GAP
TTRCYCtpp Tetracycline transport via TolC system GAP
__Ecoli_panGEMs__BTS5 Biotin synthase GAP
RFAMPtpp Rifampin transport via TolC system GAP
MEPNabcpp methylpshophonic acid abc transporter GAP