Search for any model, metabolite or reaction by BiGG ID or name.

To search for entries linked to external identifiers, use the format [namespace]:[identifier]. Possible namespaces are: (auto indicates the the enitity type is automatically derived from the identifier.)

  • CHEBI
    • Ex: CHEBI:17790
  • RHEA
    • Ex: RHEA:16505
  • InChIKey
    • The rightmost two parts of the InChIKey can optionally be omitted to search for compounds with different protonation states and different stereochemistries.
    • Ex: InChiKey:ZKHQWZAMYRWXGA-KQYNXXCUSA-J, InChiKey:ZKHQWZAMYRWXGA-KQYNXXCUSA, InChiKey:ZKHQWZAMYRWXGA-
  • EC / ec-code
    • Partial EC-codes can be provided, optionally with an asterix at the end.
    • Ex: ec-code:4.1.3.27, EC:4.1.3.*,
  • seed (auto), seed.compound, seed.reaction
    • Identifiers can also be entered directly.
    • Ex: cpd00023, seed:cpd00023, seed.reaction:rxn00126
  • kegg (auto), kegg.compound, kegg.reaction
    • Ex: kegg.compound:C00062, kegg:R01086
  • metacyc (auto), metacyc.compound, metacyc.reaction
    • Ex: metacyc:VAL, metacyc:BRANCHED-CHAINAMINOTRANSFERVAL-RXN
  • metanetx (auto), metanetx.chemical, metanetx.reaction
    • Identifiers can also be entered directly.
    • Ex: metanetx:MNXR100289, MNXR100289

BiGGr
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  3. 562_34088_json
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  5. PDFJAPKP_03850
Gene
PDFJAPKP_03850
  • Model: 562_34088_json
Associated reactions
  BiGG ID Name Gene reaction rule
NDPK5 nucleoside-diphosphate kinase (ATP:dGDP) PDFJAPKP_03850 or PDFJAPKP_01484
NDPK6 nucleoside-diphosphate kinase (ATP:dUDP) PDFJAPKP_03850 or PDFJAPKP_01484
NDPK8 nucleoside-diphosphate kinase (ATP:dADP) PDFJAPKP_03850 or PDFJAPKP_01484
ADK4 adentylate kinase (ITP) PDFJAPKP_03850
NDPK7 nucleoside-diphosphate kinase (ATP:dCDP) PDFJAPKP_03850 or PDFJAPKP_01484
ADK1 adenylate kinase PDFJAPKP_03850
NDPK2 nucleoside-diphosphate kinase (ATP:UDP) PDFJAPKP_03850 or PDFJAPKP_01484
NDPK3 nucleoside-diphosphate kinase (ATP:CDP) PDFJAPKP_01484 or PDFJAPKP_03850
NDPK4 nucleoside-diphosphate kinase (ATP:dTDP) PDFJAPKP_03850 or PDFJAPKP_01484
NDPK1 nucleoside-diphosphate kinase (ATP:GDP) PDFJAPKP_03850 or PDFJAPKP_01484
ADK3 adentylate kinase (GTP) PDFJAPKP_03850
DADK deoxyadenylate kinase PDFJAPKP_03850
ADNK1 adenosine kinase PDFJAPKP_03850