O2tex in 562_45434_json
- oxygen transport via diffusion (extracellular to periplasm)
- o2_e:0 ⇌ o2_p:0
- Bounds: (-1000.0, 1000.0)
- Universal Reaction: O2tex
Gene Reaction Rule
GCBDFOPN_00290 or GCBDFOPN_01019 or GCBDFOPN_01560 or GCBDFOPN_02401
| BiGG ID | Name | |
|---|---|---|
 |
GCBDFOPN_02401 | None |
|
GCBDFOPN_00290 | None |
|
GCBDFOPN_01560 | None |
|
GCBDFOPN_01019 | None |
MEMOTE Flags
This reaction was flagged in the following MEMOTE tests:
There are a total of 5 reversible oxygen-containing reactions (9.80% of all oxygen-containing reactions): O2Stex, O2tpp, INOSTO, EX_o2_e, O2tex
The directionality of oxygen-producing/-consuming reactions affects the model's ability to grow anaerobically i.e. create faux-anaerobic organisms. This test reports how many of these oxygen-containing reactions are reversible. This test does not have any mandatory 'pass' criteria. Implementation: First, find the metabolite representing atmospheric oxygen in the model on the basis of an internal mapping table or by specifically looking for the formula "O2". Then, find all reactions that produce or consume oxygen and report those that are reversible.