Search for any model, metabolite or reaction by BiGG ID or name.

To search for entries linked to external identifiers, use the format [namespace]:[identifier]. Possible namespaces are: (auto indicates the the enitity type is automatically derived from the identifier.)

  • CHEBI
    • Ex: CHEBI:17790
  • RHEA
    • Ex: RHEA:16505
  • InChIKey
    • The rightmost two parts of the InChIKey can optionally be omitted to search for compounds with different protonation states and different stereochemistries.
    • Ex: InChiKey:ZKHQWZAMYRWXGA-KQYNXXCUSA-J, InChiKey:ZKHQWZAMYRWXGA-KQYNXXCUSA, InChiKey:ZKHQWZAMYRWXGA-
  • EC / ec-code
    • Partial EC-codes can be provided, optionally with an asterix at the end.
    • Ex: ec-code:4.1.3.27, EC:4.1.3.*,
  • seed (auto), seed.compound, seed.reaction
    • Identifiers can also be entered directly.
    • Ex: cpd00023, seed:cpd00023, seed.reaction:rxn00126
  • kegg (auto), kegg.compound, kegg.reaction
    • Ex: kegg.compound:C00062, kegg:R01086
  • metacyc (auto), metacyc.compound, metacyc.reaction
    • Ex: metacyc:VAL, metacyc:BRANCHED-CHAINAMINOTRANSFERVAL-RXN
  • metanetx (auto), metanetx.chemical, metanetx.reaction
    • Identifiers can also be entered directly.
    • Ex: metanetx:MNXR100289, MNXR100289

BiGGr
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  3. 562_50214_json
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  5. JFBCMFDJ_04065
Gene
JFBCMFDJ_04065
  • Model: 562_50214_json
Associated reactions
  BiGG ID Name Gene reaction rule
NTD2 5'-nucleotidase (UMP) JFBCMFDJ_01810 or JFBCMFDJ_00067 or JFBCMFDJ_04065
NTD4 5'-nucleotidase (CMP) JFBCMFDJ_01810 or JFBCMFDJ_04065
PYDXPP Pyridoxal 5-phosphate phosphatase JFBCMFDJ_04275 or JFBCMFDJ_00618 or JFBCMFDJ_03972 or JFBCMFDJ_04065
G3PT glycerol-3-phosphatase JFBCMFDJ_03849 or JFBCMFDJ_04065
NTD9 5'-nucleotidase (GMP) JFBCMFDJ_01810 or JFBCMFDJ_01078 or JFBCMFDJ_04065
NTD7 5'-nucleotidase (AMP) JFBCMFDJ_01810 or JFBCMFDJ_01078 or JFBCMFDJ_04065
R5PP ribose 5-phosphate phosphatase JFBCMFDJ_03849 or JFBCMFDJ_01870 or JFBCMFDJ_04065 or JFBCMFDJ_02285 or JFBCMFDJ_00752