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Gene
GAP
Associated reactions
  BiGG ID Name Gene reaction rule
HCYSMT homocysteine S-methyltransferase GAP
UDPGALM UDPgalactopyranose mutase GAP
TDPDRE dTDP-4-dehydrorhamnose 3,5-epimerase GAP
TDPDRR dTDP-4-dehydrorhamnose reductase GAP
AOBUTDs L-2-amino-3-oxobutanoate decarboxylation (spontaneous) GAP
IDOND L-idonate 5-dehydrogenase GAP
IDOND2 L-indonate 5-dehydrogenase (NADP) GAP
G5SADs L-glutamate 5-semialdehyde dehydratase (spontaneous) GAP
O2tpp o2 transport via diffusion (periplasm) GAP
CO2tpp CO2 transporter via diffusion (periplasm) GAP
__Ecoli_panGEMs__FE3DCITabcpp Iron transport from ferric-dicitrate via ABC system (periplasm) GAP
__Ecoli_panGEMs__FE3DCITtonex Ferric-dicitrate transport via ton system (extracellular) GAP
ACALDtpp acetaldehyde reversible transport (periplasm) GAP
__Ecoli_panGEMs__O16GLCT1 Glucosyltransferase I (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AP2pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP3pp O16 antigen polymerase (periplasm) GAP
DATPHs dATP amine hydrolysis (spontaneous) GAP
NOtpp NO transport (diffusion) GAP
N2Otpp nitrious oxide transport (diffusion) GAP
FALDtpp formaldehyde transport via diffusion (periplasm) GAP
__Ecoli_panGEMs__FECRMexs Ferrichrome Fe(III)-loading reaction (spontaneous) GAP
__Ecoli_panGEMs__ARBTNexs Aerobactin Fe-loading reaction (spontaneous) GAP
__Ecoli_panGEMs__FEOXAMexs Ferroxamine Fe3-loading reaction (spontaneous) GAP
__Ecoli_panGEMs__FEENTERexs Enterobactin Fe(III) binding (spontaneous) GAP
__Ecoli_panGEMs__FE3HOXexs Fe(III) hydroxamate Fe-loading reaction (spontaneaous) GAP
__Ecoli_panGEMs__CPGNexs Coprogen Fe-loading reaction (spontaneaous) GAP
ATPHs ATP amine hydrolysis (spontaneous) GAP
GTPHs GTP amine hydrolysis (spontaneous) GAP
IDONt2rpp L-idonate transport via proton symport, reversible (periplasm) GAP
METOX1s methionine oxidation (spontaneous) GAP
METOX2s methionine oxidation 2 (spontaneous) GAP
FRUURt2rpp D-fructuronate transport via proton symport, reversible (periplasm) GAP
__Ecoli_panGEMs__O16AT Rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate O-acetyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16GALFT Galactofuranosyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AUNDtpp O16 antigen (flippase, cytoplasm to periplasm) GAP
__Ecoli_panGEMs__O16AP1pp O16 antigen polymerase (periplasm) GAP
HCYSMT2 Homocysteine Methyltransferase GAP
MMETt2pp S-methylmethionine permease (periplasm) GAP
FALGTHLs formaldehyde glutathione ligase (spontaneous) GAP
GALTptspp Galactitol transport via PEP:Pyr PTS (periplasm) GAP
OMCDC 2-Oxo-4-methyl-3-carboxypentanoate decarboxylation GAP
H2St1pp h2s transport (periplasm) GAP
SO2tpp SO2 transport via diffusion (periplasm) GAP
H2tpp hydrogen transport diffusion (periplasm) GAP
ACONIs aconitate isomerase (spontaneous) GAP
5DGLCNt2rpp 5-Dehydro-D-gluconate transport via proton symport, reversible (periplasm) GAP
GALCTNLt2pp L-galactonate transport via proton symport (periplasm) GAP
MTHTHFSs (2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran synthesis (spontaneous) GAP
RFAMPtex Rifampin transport via diffusion (extracellular to periplasm) GAP
MEOHtrpp Methanol reversible transport via diffusion (periplasm) GAP
ETOHtrpp ethanol reversible transport via diffusion (periplasm) GAP
CBMD carbamate deaminase GAP
DXYLTD D-xylonate dehydratase GAP
2DDARAA 2-dehydro-3-deoxy-D-arabinonate Aldolase GAP
DMSOtpp Dimethyl sulfoxide transport via diffusion (periplasm) GAP
__Ecoli_panGEMs__FE3DCITexs Dicitrate Fe(III) binding (spontaneous) GAP
DHPStr 2,3-dihydroxypropane 1-sulfonate transporter GAP
SQtr sulfoquinovose transporter GAP
DHPStex 2,3-dihydroxypropane 1-sulfonate transport via diffusion GAP
5DGLCNR 5-dehydro-D-gluconate reductase GAP
__Ecoli_panGEMs__FESD1s Iron-sulfur cluster damage (peroxide, spontaneous) GAP
SQtex sulphoquinovose transport via diffusion GAP
CBL1tonex Cob(1)alamin transport via ton system (extermal) GAP
CBItonex Cobinamide transport via ton system (extermal) GAP
DHGLYH Dehydroglycine Hydratase GAP
ADOCBLtonex Adenosylcobalimin transport via ton system (extermal) GAP
SQGH sulfoquinovosidase GAP
MEPNabcpp methylpshophonic acid abc transporter GAP
NOVBCNtex Novobiocin transport via diffusion (extracellular to periplasm) GAP
DHPTDCs2 4,5-dihydroxy-2,3-pentanedione cyclization (spontaneous) GAP
__Ecoli_panGEMs__FESD2s Iron-sulfur cluster damage (nitrous oxide, spontaneous) GAP