Search for any model, metabolite or reaction by BiGG ID or name.

To search for entries linked to external identifiers, use the format [namespace]:[identifier]. Possible namespaces are: (auto indicates the the enitity type is automatically derived from the identifier.)

  • CHEBI
    • Ex: CHEBI:17790
  • RHEA
    • Ex: RHEA:16505
  • InChIKey
    • The rightmost two parts of the InChIKey can optionally be omitted to search for compounds with different protonation states and different stereochemistries.
    • Ex: InChiKey:ZKHQWZAMYRWXGA-KQYNXXCUSA-J, InChiKey:ZKHQWZAMYRWXGA-KQYNXXCUSA, InChiKey:ZKHQWZAMYRWXGA-
  • EC / ec-code
    • Partial EC-codes can be provided, optionally with an asterix at the end.
    • Ex: ec-code:4.1.3.27, EC:4.1.3.*,
  • seed (auto), seed.compound, seed.reaction
    • Identifiers can also be entered directly.
    • Ex: cpd00023, seed:cpd00023, seed.reaction:rxn00126
  • kegg (auto), kegg.compound, kegg.reaction
    • Ex: kegg.compound:C00062, kegg:R01086
  • metacyc (auto), metacyc.compound, metacyc.reaction
    • Ex: metacyc:VAL, metacyc:BRANCHED-CHAINAMINOTRANSFERVAL-RXN
  • metanetx (auto), metanetx.chemical, metanetx.reaction
    • Identifiers can also be entered directly.
    • Ex: metanetx:MNXR100289, MNXR100289

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  3. 562_60443_json
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  5. PEEBNBDN_04031
Gene
PEEBNBDN_04031
  • Model: 562_60443_json
Associated reactions
  BiGG ID Name Gene reaction rule
NTD8pp 5'-nucleotidase (dGMP) PEEBNBDN_04031 or PEEBNBDN_03205
PTHRpp phospho-L-threonine phosphatase (periplasmic) PEEBNBDN_04031 or PEEBNBDN_03301
R5PPpp ribose 5-phosphate phosphatase PEEBNBDN_04031 or PEEBNBDN_03301
PSP_Lpp phospho-L-serine phosphatase (periplasmic) PEEBNBDN_04031 or PEEBNBDN_03301
TYRPpp phospho-L-tyrosine phosphatase (periplasmic) PEEBNBDN_04031
NTD10pp 5'-nucleotidase (XMP) PEEBNBDN_04031 or PEEBNBDN_03205
NTD1pp 5'-nucleotidase (dUMP) PEEBNBDN_03205 or PEEBNBDN_04031
NTD2pp 5'-nucleotidase (UMP) PEEBNBDN_04031 or PEEBNBDN_03205 or PEEBNBDN_03301
NTD3pp 5'-nucleotidase (dCMP) PEEBNBDN_03205 or PEEBNBDN_04031
NTD4pp 5'-nucleotidase (CMP) PEEBNBDN_03205 or PEEBNBDN_04031 or PEEBNBDN_03301
NTD5pp 5'-nucleotidase (dTMP) PEEBNBDN_04031 or PEEBNBDN_03205
NTD6pp 5'-nucleotidase (dAMP) PEEBNBDN_03205 or PEEBNBDN_04031
NTD7pp 5'-nucleotidase (AMP) PEEBNBDN_03205 or PEEBNBDN_04031 or PEEBNBDN_03301
NTD9pp 5'-nucleotidase (GMP) PEEBNBDN_03205 or PEEBNBDN_04031 or PEEBNBDN_03301
NTD12pp 5'-nucleotidase (dIMP) (periplasm) PEEBNBDN_03205 or PEEBNBDN_04031
NTD11pp 5'-nucleotidase (IMP) PEEBNBDN_03205 or PEEBNBDN_04031
G2PPpp glycerol 2-phosphate phosphatase (periplasmic) PEEBNBDN_04031 or PEEBNBDN_03301