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Gene
GAP
Associated reactions
  BiGG ID Name Gene reaction rule
PTRCTA Putrescine Transaminase GAP
ACS acetyl-CoA synthetase GAP
IPPMIb 2-isopropylmalate hydratase GAP
ANS anthranilate synthase GAP
POX pyruvate oxidase GAP
IMPC IMP cyclohydrolase GAP
IPPMIa 3-isopropylmalate dehydratase GAP
G3PD7 glycerol-3-phosphate dehydrogenase (demethylmenaquinone-8) GAP
ABTA 4-aminobutyrate transaminase GAP
SUCBZS O-succinylbenzoate-CoA synthase GAP
__Ecoli_panGEMs__GLCS1 Glycogen synthase (ADPGlc) GAP
RBK_L1 L-ribulokinase (L-ribulose) GAP
HCYSMT homocysteine S-methyltransferase GAP
PPC phosphoenolpyruvate carboxylase GAP
CITL Citrate lyase GAP
__Ecoli_panGEMs__AACPS1 Acyl-[acyl-carrier-protein] synthetase (n-C14:0) GAP
UDPGALM UDPgalactopyranose mutase GAP
TDPDRE dTDP-4-dehydrorhamnose 3,5-epimerase GAP
TDPDRR dTDP-4-dehydrorhamnose reductase GAP
DDPGALA 2-dehydro-3-deoxy-6-phosphogalactonate aldolase GAP
G3PD6 glycerol-3-phosphate dehydrogenase (menaquinone-8) GAP
CRNCDH Carnityl-CoA dehydratse GAP
IDOND L-idonate 5-dehydrogenase GAP
IDOND2 L-indonate 5-dehydrogenase (NADP) GAP
KDOPP 3-deoxy-manno-octulosonate-8-phosphatase GAP
__Ecoli_panGEMs__MCOATA Malonyl-CoA-ACP transacylase GAP
HSK homoserine kinase GAP
P5CD 1-pyrroline-5-carboxylate dehydrogenase GAP
KG6PDC 3-keto-L-gulonate 6-phosphate decarboxylase GAP
__Ecoli_panGEMs__AACPS2 Acyl-[acyl-carrier-protein] synthetase (n-C14:1) GAP
__Ecoli_panGEMs__AACPS3 Acyl-[acyl-carrier-protein] synthetase (n-C16:0) GAP
__Ecoli_panGEMs__AACPS4 Acyl-[acyl-carrier-protein] synthetase (n-C16:1) GAP
GLYCDx Glycerol dehydrogenase GAP
DCTPD dCTP deaminase GAP
AMANK N-acetyl-D-mannosamine kinase GAP
__Ecoli_panGEMs__UAGAAT UDP-N-acetylglucosamine acyltransferase GAP
ASAD aspartate-semialdehyde dehydrogenase GAP
SULR sulfite reductase (NADPH2) GAP
PRAGSr phosphoribosylglycinamide synthase GAP
MI1PP myo-inositol 1-phosphatase GAP
CBPS carbamoyl-phosphate synthase (glutamine-hydrolysing) GAP
__Ecoli_panGEMs__ACOATA Acetyl-CoA ACP transacylase GAP
SUCptspp sucrose transport via PEP:Pyr (periplasm) GAP
SULabcpp sulfate transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__TSULabcpp Thiosulfate transport via ABC system (periplasm) GAP
DDGALK 2-dehydro-3-deoxygalactonokinase GAP
TAURabcpp taurine transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__NO3R1bpp Nitrate reductase (Ubiquinol-8) GAP
__Ecoli_panGEMs__NO3R2bpp Nitrate reductase (Menaquinol-8) (periplasm) GAP
THMabcpp thiamine transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__FDMO FMNH2-dependent monooxygenase GAP
__Ecoli_panGEMs__FEOXAMabcpp Ferroxamine transport via ABC system (periplasm) GAP
CBL1abcpp Cob(1)alamin transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__FEENTERabcpp Fe-enterobactin transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__FECRMabcpp Ferrichrome transport via ABC system (periplasm) GAP
ALLabcpp D-allose transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__FE3DCITabcpp Iron transport from ferric-dicitrate via ABC system (periplasm) GAP
__Ecoli_panGEMs__FE3DCITtonex Ferric-dicitrate transport via ton system (extracellular) GAP
CYSabcpp L-cysteine uptake via ABC system (periplasm) GAP
__Ecoli_panGEMs__FDMO3 FMNH2-dependent monooxygenase (ethanesulfonate) GAP
__Ecoli_panGEMs__FDMO4 FMNH2-dependent monooxygenase (butanesulfonate) GAP
__Ecoli_panGEMs__O16GLCT1 Glucosyltransferase I (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AP2pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP3pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16A4Lpp O16 anitgen (x4) ligase (periplasm) GAP
FRULYSK Fructoselysine Kinase GAP
__Ecoli_panGEMs__FDMO6 FMNH2-dependent monooxygenase (sulfoacetate) GAP
GGGABADr gamma-glutamyl-gamma aminobutyric acid dehydrogenase GAP
__Ecoli_panGEMs__ECA4OALpp Enterobacterial common antigen (x4) O-antigen ligase (periplasm) GAP
HG2abcpp Mercury (Hg+2) ABC transporter (periplasm) GAP
__Ecoli_panGEMs__GLCTR3 Glucosyltransferase III (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPT4 Heptosyltransferase IV (LPS core synthesis) GAP
NHFRBO NADH:flavorubredoxin oxidoreductase GAP
__Ecoli_panGEMs__FDMO2 FMNH2-dependent monooxygenase (methanesulfonate) GAP
AGt3 silver transport out via proton antiport GAP
R15BPK ribose-1,5-bisphosphokinase GAP
Kabcpp Potassium ABC transporter (periplasm) GAP
MAN6Pt6_2pp Mannose-6-phosphate transport via phosphate antiport (periplasm) GAP
__Ecoli_panGEMs__CPGNabcpp Coprogen transport via ABC system (periplasm) GAP
CBIuabcpp Cobinamide transport via ABC system (uptake, periplasm) GAP
3KGK 3-keto-L-gulonate kinase GAP
FRULYSDG Fructoselysine phosphate deglycase GAP
IDONt2rpp L-idonate transport via proton symport, reversible (periplasm) GAP
PROabcpp L-proline transport via ABC system (periplasm) GAP
PROt4pp Na+/Proline-L symporter (periplasm) GAP
TUNGSabcpp tungstate transport via ABC system (periplasm) GAP
MOBDabcpp molybdate transport via ABC system (periplasm) GAP
ADOCBLabcpp Adenosylcobalamin transport via ABC system (periplasm) GAP
CRNabcpp L-carnitine transport via ABC system (periplasm) GAP
CRNDabcpp D-carnitine transport via ABC system (periplasm) GAP
CTBTabcpp crotonobetaine transport via ABC system (periplasm) GAP
ALLPI Allose 6-phosphate isomerase GAP
ALLK Allose kinase GAP
ALLULPE Allulose 6-phosphate epimerase GAP
__Ecoli_panGEMs__O16AT Rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate O-acetyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16GALFT Galactofuranosyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AUNDtpp O16 antigen (flippase, cytoplasm to periplasm) GAP
__Ecoli_panGEMs__O16AP1pp O16 antigen polymerase (periplasm) GAP
CU2abcpp Copper (Cu+2) ABC transporter (periplasm) GAP
COBALT2abcpp Cobalt (Co+2) ABC transporter (periplasm) GAP
NI2abcpp Nickle (Ni+2) ABC transporter (periplasm) GAP
HCYSMT2 Homocysteine Methyltransferase GAP
MMETt2pp S-methylmethionine permease (periplasm) GAP
ACGK acetylglutamate kinase GAP
HMBS hydroxymethylbilane synthase GAP
GALTptspp Galactitol transport via PEP:Pyr PTS (periplasm) GAP
ZN2abcpp Zinc (Zn+2) ABC transporter, efflux (periplasm) GAP
GLYC3Pabcpp sn-Glycerol 3-phosphate transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__ACMUMptspp N-acetylmuramate transport via PEP:Pyr PTS (periplasm) GAP
CRNCAR carnitine-CoA racemase GAP
__Ecoli_panGEMs__ARBTNabcpp Aerobactin transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__AACPS5 Acyl-[acyl-carrier-protein] synthetase (n-C18:1) GAP
CD2abcpp Cadmium (Cd+2) ABC transporter (periplasm) GAP
__Ecoli_panGEMs__MOAT3C 3-deoxy-D-manno-octulosonic acid transferase III (LPS core biosynthesis) GAP
CUt3 copper transport out via proton antiport GAP
__Ecoli_panGEMs__RHAT1 Rhamnosyltransferase I (LPS core biosynthesis) GAP
__Ecoli_panGEMs__GALT1 Galactosyltransferase I (LPS core synthesis) GAP
__Ecoli_panGEMs__GLCTR2 Glucosyltransferase II (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPK2 LPS heptose kinase II (LPS core synthesis) GAP
__Ecoli_panGEMs__AACPS8 Acyl-[acyl-carrier-protein] synthetase (n-C10:0) GAP
__Ecoli_panGEMs__AACPS9 Acyl-[acyl-carrier-protein] synthetase (n-C8:0) GAP
__Ecoli_panGEMs__AACPS6 Acyl-[acyl-carrier-protein] synthetase (n-C18:0) GAP
__Ecoli_panGEMs__AACPS7 Acyl-[acyl-carrier-protein] synthetase (n-C12:0) GAP
G3PGabcpp sn-glycerol-3-phosphoglycerol transport via ABC system (periplasm) GAP
G3PIabcpp sn-glycerol-3-phosphoethanolamine transport via ABC system (periplasm) GAP
G3PSabcpp sn-glycerol-3-phosphoserine transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__3OAR121 3-oxoacyl-[acyl-carrier-protein] reductase (n-C12:1) GAP
G3PEabcpp sn-glycerol-3-phosphoethanolamine transport via ABC system (periplasm) GAP
G3PCabcpp sn-glycerol-3-phosphocholine transport via ABC system (periplasm) GAP
PROGLYabcpp L-Prolinylglycine (Pro-Gly) transport via ABC system (periplasm) GAP
AICART phosphoribosylaminoimidazolecarboxamide formyltransferase GAP
GGPTRCO gamma glutamyl putrescine oxidase GAP
G6Pt6_2pp Glucose-6-phosphate transport via phosphate antiport (periplasm) GAP
GLYCK glycerate kinase GAP
__Ecoli_panGEMs__G3PAT141 Glycerol-3-phosphate acyltransferase (C14:1) GAP
__Ecoli_panGEMs__G3PAT181 Glycerol-3-phosphate acyltransferase (C18:1) GAP
__Ecoli_panGEMs__3OAR120 3-oxoacyl-[acyl-carrier-protein] reductase (n-C12:0) GAP
ALR4x aldose reductase (acetol) GAP
F6Pt6_2pp Fructose-6-phosphate transport via phosphate antiport (periplasm) GAP
GAM6Pt6_2pp D-Glucosamine 6-phosphate transport via phosphate antiport (periplasm) GAP
__Ecoli_panGEMs__FE3HOXabcpp Ferric-dicitrate transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__FADRx2 FAD reductase GAP
LALDO2x D-Lactaldehyde:NAD+ 1-oxidoreductase GAP
__Ecoli_panGEMs__3OAR181 3-oxoacyl-[acyl-carrier-protein] reductase (n-C18:1) GAP
__Ecoli_panGEMs__G3PAT140 Glycerol-3-phosphate acyltransferase (C14:0) GAP
__Ecoli_panGEMs__G3PAT160 Glycerol-3-phosphate acyltransferase (C16:0) GAP
__Ecoli_panGEMs__G3PAT161 Glycerol-3-phosphate acyltransferase (C16:1) GAP
__Ecoli_panGEMs__3OAR140 3-oxoacyl-[acyl-carrier-protein] reductase (n-C14:0) GAP
__Ecoli_panGEMs__3OAR160 3-oxoacyl-[acyl-carrier-protein] reductase (n-C16:0) GAP
__Ecoli_panGEMs__3OAR141 3-oxoacyl-[acyl-carrier-protein] reductase (n-C14:1) GAP
__Ecoli_panGEMs__3OAR161 3-oxoacyl-[acyl-carrier-protein] reductase (n-C16:1) GAP
__Ecoli_panGEMs__G3PAT180 Glycerol-3-phosphate acyltransferase (C18:0) GAP
CGLYabcpp L-Cysteinylglycine (Cys-Gly) transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__3OAR60 3-oxoacyl-[acyl-carrier-protein] reductase (n-C6:0) GAP
__Ecoli_panGEMs__3OAR80 3-oxoacyl-[acyl-carrier-protein] reductase (n-C8:0) GAP
__Ecoli_panGEMs__3OAR40 3-oxoacyl-[acyl-carrier-protein] reductase (n-C4:0) GAP
__Ecoli_panGEMs__3OAR100 3-oxoacyl-[acyl-carrier-protein] reductase (n-C10:0) GAP
__Ecoli_panGEMs__3OAR180 3-oxoacyl-[acyl-carrier-protein] reductase (n-C18:0) GAP
__Ecoli_panGEMs__G3PAT120 Glycerol-3-phosphate acyltransferase (C12:0) GAP
NADH18pp NADH dehydrogenase (demethylmenaquinone-8 & 3 protons) (periplasm) GAP
5DGLCNt2rpp 5-Dehydro-D-gluconate transport via proton symport, reversible (periplasm) GAP
NADH17pp NADH dehydrogenase (menaquinone-8 & 3 protons) (periplasm) GAP
PPAt4pp Na+/Propionate symporter (periplasm) GAP
FRULYSE fructoselysine 3-epimerase GAP
FRULYSt2pp Fructoselysine transport via proton symport (periplasm) GAP
PSCLYSt2pp psicoselysine transport via proton symport (periplasm) GAP
CTECOAI8 3-cis-2-trans-enoyl-CoA isomerase GAP
CTECOAI6 3-cis-2-trans-enoyl-CoA isomerase GAP
__Ecoli_panGEMs__OGMEACPR 3-Oxo-glutaryl-[ACP] methyl ester reductase GAP
XYLK2 L-xylulokinase GAP
CTECOAI7 3-cis-2-trans-enoyl-CoA isomerase GAP
__Ecoli_panGEMs__ACPPAT140 Acyl-(acyl carrier protein):phosphate acyltransferase (C14:0) GAP
__Ecoli_panGEMs__OPMEACPR 3-Oxo-pimeloyl-[ACP] methyl ester reductase GAP
__Ecoli_panGEMs__ACPPAT141 Acyl-(acyl carrier protein):phosphate acyltransferase (C14:1) GAP
__Ecoli_panGEMs__ACPPAT161 Acyl-(acyl carrier protein):phosphate acyltransferase (C16:1) GAP
__Ecoli_panGEMs__ACPPAT180 Acyl-(acyl carrier protein):phosphate acyltransferase (C18:0) GAP
__Ecoli_panGEMs__ACPPAT120 Acyl-(acyl carrier protein):phosphate acyltransferase (C12:0) GAP
SHCHCS3 2-succinyl-6-hydroxy-2,4-cyclohexadiene 1-carboxylate synthase GAP
3OXCOAT 3-oxoadipyl-CoA thiolase GAP
__Ecoli_panGEMs__DHBSZ3FEabcpp 23dhbsz3 Fe III transport via ABC system periplasm GAP
DXYLTD D-xylonate dehydratase GAP
2DDARAA 2-dehydro-3-deoxy-D-arabinonate Aldolase GAP
__Ecoli_panGEMs__ACPPAT160 Acyl-(acyl carrier protein):phosphate acyltransferase (C16:0) GAP
CHLt3pp choline transport via proton antiport (periplasm) GAP
GLYBt3pp Glycine betaine transport via proton antiport (periplasm) GAP
__Ecoli_panGEMs__ACPPAT181 Acyl-(acyl carrier protein):phosphate acyltransferase (C18:1) GAP
APPLDHr aminopropanol dehydrogenase reversible GAP
G2PP glycerol-2-phosphate phosphatase GAP
GLYC2Pabcpp sn-Glycerol 2-phosphate transport via ABC system (periplasm) GAP
SELabcpp selenatenate transport via ABC system (periplasm) GAP
SEPHCHCS 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase GAP
DHNCOAS 1,4-dihydroxy-2-napthoyl-CoA synthase GAP
__Ecoli_panGEMs__PUACGAMtr Transport of poly-?-1,6-N-acetyl-D-glucosamine (poly-?-1,6-N-acetyl-D-glucosamine synthase) GAP
5DGLCNR 5-dehydro-D-gluconate reductase GAP
__Ecoli_panGEMs__PUACGAMS Poly-?-1,6-N-acetyl-D-glucosamine synthase GAP
RU5PP Ribulose-5-Phosphate Phosphatase GAP
__Ecoli_panGEMs__THZPSN3 Thiazole phosphate synthesis GAP
RHMND L-rhamnonate dehydratase GAP
4HTHRK 4-Hydroxy-L-threonine kinase GAP
ARMEPNS ?-D-ribose 1-methylphosphonate 5-triphosphate synthase GAP
MEPNabcpp methylpshophonic acid abc transporter GAP
OMMBLHXy 2-Octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (NADPHl) GAP
OPHHXy 2-Octaprenylphenol hydroxylase (NADPH) GAP
PROD3 Proline dehydrogenase (q8) GAP
3HPADHi 3-Hydroxypropanal Dehydrogenase GAP
SLNTabcpp selenite ABC transporter (periplasm) GAP
PACCOAE ring 1,2-phenylacetyl-CoA epoxidase (NADPH) GAP
OXDHCOAT 3-oxo-5,6-dehydrosuberyl-CoA thiolase GAP
PYROX pyrimidine oxygenase GAP