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Gene
GAP
Associated reactions
  BiGG ID Name Gene reaction rule
PTRCTA Putrescine Transaminase GAP
ACS acetyl-CoA synthetase GAP
IPPMIb 2-isopropylmalate hydratase GAP
DHAD2 Dihydroxy-acid dehydratase (2,3-dihydroxy-3-methylpentanoate) GAP
G3PD5 glycerol-3-phosphate dehydrogenase (ubiquinone-8) GAP
ANS anthranilate synthase GAP
POX pyruvate oxidase GAP
CHORS chorismate synthase GAP
TMPPP thiamine-phosphate diphosphorylase GAP
DHAD1 dihydroxy-acid dehydratase (2,3-dihydroxy-3-methylbutanoate) GAP
IPPMIa 3-isopropylmalate dehydratase GAP
G3PD7 glycerol-3-phosphate dehydrogenase (demethylmenaquinone-8) GAP
ABTA 4-aminobutyrate transaminase GAP
SUCBZS O-succinylbenzoate-CoA synthase GAP
ICHORT isochorismatase GAP
__Ecoli_panGEMs__GLCS1 Glycogen synthase (ADPGlc) GAP
RBK_L1 L-ribulokinase (L-ribulose) GAP
GLCRAL 5-dehydro-4-deoxyglucarate aldolase GAP
HCYSMT homocysteine S-methyltransferase GAP
LACZ b-galactosidase GAP
PPC phosphoenolpyruvate carboxylase GAP
CITL Citrate lyase GAP
__Ecoli_panGEMs__AACPS1 Acyl-[acyl-carrier-protein] synthetase (n-C14:0) GAP
BUTCT Acetyl-CoA:butyrate-CoA transferase GAP
UDPGALM UDPgalactopyranose mutase GAP
TDPDRE dTDP-4-dehydrorhamnose 3,5-epimerase GAP
TDPDRR dTDP-4-dehydrorhamnose reductase GAP
DDPGALA 2-dehydro-3-deoxy-6-phosphogalactonate aldolase GAP
G3PD6 glycerol-3-phosphate dehydrogenase (menaquinone-8) GAP
IDOND L-idonate 5-dehydrogenase GAP
IDOND2 L-indonate 5-dehydrogenase (NADP) GAP
ADD adenine deaminase GAP
__Ecoli_panGEMs__MCOATA Malonyl-CoA-ACP transacylase GAP
HSK homoserine kinase GAP
P5CD 1-pyrroline-5-carboxylate dehydrogenase GAP
X5PL3E L-xylulose 5-phosphate 3-epimerase GAP
DOGULNR 2,3 dioxo-L-gulonate reductase GAP
__Ecoli_panGEMs__AACPS2 Acyl-[acyl-carrier-protein] synthetase (n-C14:1) GAP
G3PD2 glycerol-3-phosphate dehydrogenase (NADP) GAP
__Ecoli_panGEMs__AACPS3 Acyl-[acyl-carrier-protein] synthetase (n-C16:0) GAP
__Ecoli_panGEMs__AACPS4 Acyl-[acyl-carrier-protein] synthetase (n-C16:1) GAP
HOPNTAL 4-hydroxy-2-oxopentanoate aldolase GAP
DCTPD dCTP deaminase GAP
AMANK N-acetyl-D-mannosamine kinase GAP
__Ecoli_panGEMs__UAGAAT UDP-N-acetylglucosamine acyltransferase GAP
HISTD histidinol dehydrogenase GAP
BPNT 3',5'-bisphosphate nucleotidase GAP
ASAD aspartate-semialdehyde dehydrogenase GAP
GPDDA1 Glycerophosphodiester phosphodiesterase (Glycerophosphocholine) GAP
GPDDA2 Glycerophosphodiester phosphodiesterase (Glycerophosphoethanolamine) GAP
SOTA Succinylornithine transaminase GAP
SGSAD Succinylglutamic semialdehyde dehydrogenase GAP
GPDDA5 Glycerophosphodiester phosphodiesterase (Glycerophosphoinositol) GAP
SULR sulfite reductase (NADPH2) GAP
PRAGSr phosphoribosylglycinamide synthase GAP
AMANAPEr N-acetylmannosamine 6-phosphate epimerase GAP
MI1PP myo-inositol 1-phosphatase GAP
ARGSL argininosuccinate lyase GAP
CBPS carbamoyl-phosphate synthase (glutamine-hydrolysing) GAP
__Ecoli_panGEMs__ACOATA Acetyl-CoA ACP transacylase GAP
SERASr (L-seryl)adenylate synthase GAP
SUCptspp sucrose transport via PEP:Pyr (periplasm) GAP
__Ecoli_panGEMs__TSULabcpp Thiosulfate transport via ABC system (periplasm) GAP
DDGALK 2-dehydro-3-deoxygalactonokinase GAP
TAURabcpp taurine transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__NO3R1bpp Nitrate reductase (Ubiquinol-8) GAP
__Ecoli_panGEMs__NO3R2bpp Nitrate reductase (Menaquinol-8) (periplasm) GAP
THMabcpp thiamine transport via ABC system (periplasm) GAP
XYLUt2pp L-xylulose transport in via proton symport (periplasm) GAP
__Ecoli_panGEMs__FDMO FMNH2-dependent monooxygenase GAP
__Ecoli_panGEMs__FEOXAMabcpp Ferroxamine transport via ABC system (periplasm) GAP
CBL1abcpp Cob(1)alamin transport via ABC system (periplasm) GAP
ACACt2pp acetoacetate transport via proton symport (periplasm) GAP
__Ecoli_panGEMs__FEENTERabcpp Fe-enterobactin transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__FECRMabcpp Ferrichrome transport via ABC system (periplasm) GAP
ALLabcpp D-allose transport via ABC system (periplasm) GAP
ARGAGMt7pp Arginine/agmatine antiport (periplasm) GAP
__Ecoli_panGEMs__FE3DCITabcpp Iron transport from ferric-dicitrate via ABC system (periplasm) GAP
CHLabcpp choline transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__FE3DCITtonex Ferric-dicitrate transport via ton system (extracellular) GAP
CYSabcpp L-cysteine uptake via ABC system (periplasm) GAP
__Ecoli_panGEMs__METS Methionine synthase GAP
__Ecoli_panGEMs__FDMO3 FMNH2-dependent monooxygenase (ethanesulfonate) GAP
__Ecoli_panGEMs__FDMO4 FMNH2-dependent monooxygenase (butanesulfonate) GAP
CYSabc2pp L-cysteine export via ABC system (cytoplasm to periplasm) GAP
__Ecoli_panGEMs__O16GLCT1 Glucosyltransferase I (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AP2pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP3pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16A4Lpp O16 anitgen (x4) ligase (periplasm) GAP
DHPS2_1 dihydropteroate synthase GAP
BUTt2rpp Butyrate transport via proton symport, reversible (periplasm) GAP
FRULYSK Fructoselysine Kinase GAP
__Ecoli_panGEMs__FDMO6 FMNH2-dependent monooxygenase (sulfoacetate) GAP
PHEMEabcpp protoheme transport via ABC system (periplasm) GAP
GGGABADr gamma-glutamyl-gamma aminobutyric acid dehydrogenase GAP
__Ecoli_panGEMs__ECA4OALpp Enterobacterial common antigen (x4) O-antigen ligase (periplasm) GAP
HG2abcpp Mercury (Hg+2) ABC transporter (periplasm) GAP
__Ecoli_panGEMs__GLCTR3 Glucosyltransferase III (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPT4 Heptosyltransferase IV (LPS core synthesis) GAP
NHFRBO NADH:flavorubredoxin oxidoreductase GAP
__Ecoli_panGEMs__NTRIR4pp Nitrite Reductase (Menaquinole-8, periplasm) GAP
__Ecoli_panGEMs__NTRIR3pp Nitrite Reductase (Ubiquinole-8, periplasm) GAP
__Ecoli_panGEMs__FDMO2 FMNH2-dependent monooxygenase (methanesulfonate) GAP
AGt3 silver transport out via proton antiport GAP
R15BPK ribose-1,5-bisphosphokinase GAP
Kabcpp Potassium ABC transporter (periplasm) GAP
__Ecoli_panGEMs__CPGNabcpp Coprogen transport via ABC system (periplasm) GAP
CBIuabcpp Cobinamide transport via ABC system (uptake, periplasm) GAP
3KGK 3-keto-L-gulonate kinase GAP
FRULYSDG Fructoselysine phosphate deglycase GAP
IDONt2rpp L-idonate transport via proton symport, reversible (periplasm) GAP
PROabcpp L-proline transport via ABC system (periplasm) GAP
PROt4pp Na+/Proline-L symporter (periplasm) GAP
__Ecoli_panGEMs__FECRMtonex Ferrichrome transport via ton system (extracellular) GAP
ADOCBLabcpp Adenosylcobalamin transport via ABC system (periplasm) GAP
CRNabcpp L-carnitine transport via ABC system (periplasm) GAP
CRNDabcpp D-carnitine transport via ABC system (periplasm) GAP
CTBTabcpp crotonobetaine transport via ABC system (periplasm) GAP
ALLPI Allose 6-phosphate isomerase GAP
ALLK Allose kinase GAP
ALLULPE Allulose 6-phosphate epimerase GAP
FRUURt2rpp D-fructuronate transport via proton symport, reversible (periplasm) GAP
__Ecoli_panGEMs__O16AT Rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate O-acetyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16GALFT Galactofuranosyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AUNDtpp O16 antigen (flippase, cytoplasm to periplasm) GAP
__Ecoli_panGEMs__O16AP1pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__FE3HOXtonex Fe(III)hydroxamine transport via ton system (extracellular) GAP
CU2abcpp Copper (Cu+2) ABC transporter (periplasm) GAP
COBALT2abcpp Cobalt (Co+2) ABC transporter (periplasm) GAP
NI2abcpp Nickle (Ni+2) ABC transporter (periplasm) GAP
HCYSMT2 Homocysteine Methyltransferase GAP
GLYBabcpp Glycine betaine transport via ABC system (periplasm) GAP
MMETt2pp S-methylmethionine permease (periplasm) GAP
ACGK acetylglutamate kinase GAP
HMBS hydroxymethylbilane synthase GAP
FHL Formate-hydrogen lyase GAP
GALTptspp Galactitol transport via PEP:Pyr PTS (periplasm) GAP
ZN2abcpp Zinc (Zn+2) ABC transporter, efflux (periplasm) GAP
GLYC3Pabcpp sn-Glycerol 3-phosphate transport via ABC system (periplasm) GAP
PTRCORNt7pp putrescine/ornithine antiporter (periplasm) GAP
__Ecoli_panGEMs__ACMUMptspp N-acetylmuramate transport via PEP:Pyr PTS (periplasm) GAP
__Ecoli_panGEMs__ARBTNabcpp Aerobactin transport via ABC system (periplasm) GAP
GLUSy glutamate synthase (NADPH) GAP
__Ecoli_panGEMs__AACPS5 Acyl-[acyl-carrier-protein] synthetase (n-C18:1) GAP
CD2abcpp Cadmium (Cd+2) ABC transporter (periplasm) GAP
__Ecoli_panGEMs__MOAT3C 3-deoxy-D-manno-octulosonic acid transferase III (LPS core biosynthesis) GAP
CUt3 copper transport out via proton antiport GAP
__Ecoli_panGEMs__RHAT1 Rhamnosyltransferase I (LPS core biosynthesis) GAP
__Ecoli_panGEMs__GALT1 Galactosyltransferase I (LPS core synthesis) GAP
__Ecoli_panGEMs__GLCTR2 Glucosyltransferase II (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPK2 LPS heptose kinase II (LPS core synthesis) GAP
GPDDA4 Glycerophosphodiester phosphodiesterase (Glycerophosphoglycerol) GAP
__Ecoli_panGEMs__AACPS8 Acyl-[acyl-carrier-protein] synthetase (n-C10:0) GAP
__Ecoli_panGEMs__AACPS9 Acyl-[acyl-carrier-protein] synthetase (n-C8:0) GAP
HXCT Acetyl-CoA:hexanoate-CoA transferase GAP
__Ecoli_panGEMs__AACPS6 Acyl-[acyl-carrier-protein] synthetase (n-C18:0) GAP
__Ecoli_panGEMs__AACPS7 Acyl-[acyl-carrier-protein] synthetase (n-C12:0) GAP
G3PGabcpp sn-glycerol-3-phosphoglycerol transport via ABC system (periplasm) GAP
G3PIabcpp sn-glycerol-3-phosphoethanolamine transport via ABC system (periplasm) GAP
GALCTND galactonate dehydratase GAP
G3PSabcpp sn-glycerol-3-phosphoserine transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__3OAR121 3-oxoacyl-[acyl-carrier-protein] reductase (n-C12:1) GAP
HEXt2rpp hexanoate transport via proton symport, reversible (periplasm) GAP
G3PEabcpp sn-glycerol-3-phosphoethanolamine transport via ABC system (periplasm) GAP
G3PCabcpp sn-glycerol-3-phosphocholine transport via ABC system (periplasm) GAP
PROGLYabcpp L-Prolinylglycine (Pro-Gly) transport via ABC system (periplasm) GAP
GTHRDabcpp Reduced glutathione via ABC system (periplasm) GAP
GGPTRCO gamma glutamyl putrescine oxidase GAP
__Ecoli_panGEMs__FEOXAMtonex Ferroxamine transport via ton system (extracellular) GAP
TPRDCOAS triphosphoribosyl-dephospho-CoA synthase GAP
GLYCK glycerate kinase GAP
GPDDA3 Glycerophosphodiester phosphodiesterase (Glycerophosphoserine) GAP
__Ecoli_panGEMs__G3PAT141 Glycerol-3-phosphate acyltransferase (C14:1) GAP
__Ecoli_panGEMs__G3PAT181 Glycerol-3-phosphate acyltransferase (C18:1) GAP
__Ecoli_panGEMs__3OAR120 3-oxoacyl-[acyl-carrier-protein] reductase (n-C12:0) GAP
__Ecoli_panGEMs__FE3HOXabcpp Ferric-dicitrate transport via ABC system (periplasm) GAP
SUCDi succinate dehydrogenase (irreversible) GAP
__Ecoli_panGEMs__FADRx2 FAD reductase GAP
__Ecoli_panGEMs__3OAR181 3-oxoacyl-[acyl-carrier-protein] reductase (n-C18:1) GAP
__Ecoli_panGEMs__G3PAT140 Glycerol-3-phosphate acyltransferase (C14:0) GAP
__Ecoli_panGEMs__G3PAT160 Glycerol-3-phosphate acyltransferase (C16:0) GAP
__Ecoli_panGEMs__G3PAT161 Glycerol-3-phosphate acyltransferase (C16:1) GAP
__Ecoli_panGEMs__3OAR140 3-oxoacyl-[acyl-carrier-protein] reductase (n-C14:0) GAP
__Ecoli_panGEMs__3OAR160 3-oxoacyl-[acyl-carrier-protein] reductase (n-C16:0) GAP
__Ecoli_panGEMs__3OAR141 3-oxoacyl-[acyl-carrier-protein] reductase (n-C14:1) GAP
__Ecoli_panGEMs__3OAR161 3-oxoacyl-[acyl-carrier-protein] reductase (n-C16:1) GAP
__Ecoli_panGEMs__G3PAT180 Glycerol-3-phosphate acyltransferase (C18:0) GAP
CGLYabcpp L-Cysteinylglycine (Cys-Gly) transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__3OAR60 3-oxoacyl-[acyl-carrier-protein] reductase (n-C6:0) GAP
__Ecoli_panGEMs__3OAR80 3-oxoacyl-[acyl-carrier-protein] reductase (n-C8:0) GAP
__Ecoli_panGEMs__3OAR40 3-oxoacyl-[acyl-carrier-protein] reductase (n-C4:0) GAP
__Ecoli_panGEMs__3OAR100 3-oxoacyl-[acyl-carrier-protein] reductase (n-C10:0) GAP
__Ecoli_panGEMs__3OAR180 3-oxoacyl-[acyl-carrier-protein] reductase (n-C18:0) GAP
__Ecoli_panGEMs__G3PAT120 Glycerol-3-phosphate acyltransferase (C12:0) GAP
GTHRDabc2pp glutathione export via ABC system (cytoplasm to periplasm) GAP
NADH18pp NADH dehydrogenase (demethylmenaquinone-8 & 3 protons) (periplasm) GAP
5DGLCNt2rpp 5-Dehydro-D-gluconate transport via proton symport, reversible (periplasm) GAP
GALCTNt2pp D-galactonate transport via proton symport (periplasm) GAP
NADH17pp NADH dehydrogenase (menaquinone-8 & 3 protons) (periplasm) GAP
PPAt4pp Na+/Propionate symporter (periplasm) GAP
FRULYSE fructoselysine 3-epimerase GAP
FRULYSt2pp Fructoselysine transport via proton symport (periplasm) GAP
PSCLYSt2pp psicoselysine transport via proton symport (periplasm) GAP
CTECOAI8 3-cis-2-trans-enoyl-CoA isomerase GAP
CTECOAI6 3-cis-2-trans-enoyl-CoA isomerase GAP
__Ecoli_panGEMs__OGMEACPR 3-Oxo-glutaryl-[ACP] methyl ester reductase GAP
XYLK2 L-xylulokinase GAP
CTECOAI7 3-cis-2-trans-enoyl-CoA isomerase GAP
3AMACHYD 3-aminoacrylate hydrolase GAP
__Ecoli_panGEMs__ACPPAT140 Acyl-(acyl carrier protein):phosphate acyltransferase (C14:0) GAP
__Ecoli_panGEMs__OPMEACPR 3-Oxo-pimeloyl-[ACP] methyl ester reductase GAP
__Ecoli_panGEMs__ACPPAT141 Acyl-(acyl carrier protein):phosphate acyltransferase (C14:1) GAP
__Ecoli_panGEMs__ACPPAT161 Acyl-(acyl carrier protein):phosphate acyltransferase (C16:1) GAP
__Ecoli_panGEMs__ACPPAT180 Acyl-(acyl carrier protein):phosphate acyltransferase (C18:0) GAP
__Ecoli_panGEMs__DHNPTE Dihydroneopterin epimerase GAP
__Ecoli_panGEMs__ACPPAT120 Acyl-(acyl carrier protein):phosphate acyltransferase (C12:0) GAP
SHCHCS3 2-succinyl-6-hydroxy-2,4-cyclohexadiene 1-carboxylate synthase GAP
NADPHXD NADPHX dehydratase GAP
NADPHXE NADPHX epimerase GAP
3OXCOAT 3-oxoadipyl-CoA thiolase GAP
__Ecoli_panGEMs__DHBSZ3FEabcpp 23dhbsz3 Fe III transport via ABC system periplasm GAP
DXYLTD D-xylonate dehydratase GAP
2DDARAA 2-dehydro-3-deoxy-D-arabinonate Aldolase GAP
ARBTptspp arbutin transport via PEP:Pyr PTS (periplasm) GAP
23DOGULNt4pp Na+/ 2,3-Dioxo-L-gulonate symport (periplasm) GAP
__Ecoli_panGEMs__ACPPAT160 Acyl-(acyl carrier protein):phosphate acyltransferase (C16:0) GAP
ALR2x aldose reductase (methylglyoxal) (nadh) GAP
OMPHHXy 2-octaprenyl-6-methoxyphenol hydroxylase (NADPH) GAP
__Ecoli_panGEMs__ACPPAT181 Acyl-(acyl carrier protein):phosphate acyltransferase (C18:1) GAP
G2PP glycerol-2-phosphate phosphatase GAP
__Ecoli_panGEMs__DHNPA2r Dihydroneopterin aldolase reversible GAP
GLYC2Pabcpp sn-Glycerol 2-phosphate transport via ABC system (periplasm) GAP
SHGO S-2-hydroxyglutarate oxidase GAP
NADHXD NADHX dehydratase GAP
NADHXE NADHX epimerase GAP
SELabcpp selenatenate transport via ABC system (periplasm) GAP
SEPHCHCS 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase GAP
DHNCOAS 1,4-dihydroxy-2-napthoyl-CoA synthase GAP
__Ecoli_panGEMs__PUACGAMtr Transport of poly-?-1,6-N-acetyl-D-glucosamine (poly-?-1,6-N-acetyl-D-glucosamine synthase) GAP
5DGLCNR 5-dehydro-D-gluconate reductase GAP
__Ecoli_panGEMs__PUACGAMS Poly-?-1,6-N-acetyl-D-glucosamine synthase GAP
CBL1tonex Cob(1)alamin transport via ton system (extermal) GAP
CBItonex Cobinamide transport via ton system (extermal) GAP
4HTHRA 4-hydroxy-L-threonine aldolase GAP
TYRL tyrosine lyase GAP
__Ecoli_panGEMs__THZPSN3 Thiazole phosphate synthesis GAP
4HTHRK 4-Hydroxy-L-threonine kinase GAP
AMPNTAT aminoalkylphosphonate N-acetyltransferase GAP
ADOCBLtonex Adenosylcobalimin transport via ton system (extermal) GAP
SQGH sulfoquinovosidase GAP
RPNTPH RPnTP hydrolase GAP
MEPNabcpp methylpshophonic acid abc transporter GAP
OMMBLHXy 2-Octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (NADPHl) GAP
OPHHXy 2-Octaprenylphenol hydroxylase (NADPH) GAP
PROD3 Proline dehydrogenase (q8) GAP
3HPADHi 3-Hydroxypropanal Dehydrogenase GAP
SLNTabcpp selenite ABC transporter (periplasm) GAP
OXDHCOAT 3-oxo-5,6-dehydrosuberyl-CoA thiolase GAP
PYROX pyrimidine oxygenase GAP