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Gene
GAP
Associated reactions
  BiGG ID Name Gene reaction rule
PTRCTA Putrescine Transaminase GAP
ACS acetyl-CoA synthetase GAP
ALAR alanine racemase GAP
XYLK xylulokinase GAP
GLYK glycerol kinase GAP
PPM phosphopentomutase GAP
GLYCTO2 Glycolate oxidase GAP
GLYCTO3 Glycolate oxidase GAP
IPPMIb 2-isopropylmalate hydratase GAP
GLYCTO4 Glycolate oxidase GAP
DHAD2 Dihydroxy-acid dehydratase (2,3-dihydroxy-3-methylpentanoate) GAP
POX pyruvate oxidase GAP
IMPC IMP cyclohydrolase GAP
TMPPP thiamine-phosphate diphosphorylase GAP
DHAD1 dihydroxy-acid dehydratase (2,3-dihydroxy-3-methylbutanoate) GAP
IPPMIa 3-isopropylmalate dehydratase GAP
G3PD7 glycerol-3-phosphate dehydrogenase (demethylmenaquinone-8) GAP
SUCBZS O-succinylbenzoate-CoA synthase GAP
__Ecoli_panGEMs__GLCS1 Glycogen synthase (ADPGlc) GAP
RBK_L1 L-ribulokinase (L-ribulose) GAP
TARTD L(+)-tartrate dehydratase GAP
GLCRAL 5-dehydro-4-deoxyglucarate aldolase GAP
HCYSMT homocysteine S-methyltransferase GAP
LACZ b-galactosidase GAP
PPC phosphoenolpyruvate carboxylase GAP
CITL Citrate lyase GAP
__Ecoli_panGEMs__AACPS1 Acyl-[acyl-carrier-protein] synthetase (n-C14:0) GAP
UDPGALM UDPgalactopyranose mutase GAP
TDPDRE dTDP-4-dehydrorhamnose 3,5-epimerase GAP
TDPDRR dTDP-4-dehydrorhamnose reductase GAP
DDPGALA 2-dehydro-3-deoxy-6-phosphogalactonate aldolase GAP
G3PD6 glycerol-3-phosphate dehydrogenase (menaquinone-8) GAP
IDOND L-idonate 5-dehydrogenase GAP
IDOND2 L-indonate 5-dehydrogenase (NADP) GAP
KDOPS 3-deoxy -D-manno-octulosonic -acid 8-phosphate synthase GAP
__Ecoli_panGEMs__MCOATA Malonyl-CoA-ACP transacylase GAP
NMNDA nicotinamide-nucleotide amidase GAP
P5CD 1-pyrroline-5-carboxylate dehydrogenase GAP
__Ecoli_panGEMs__AACPS2 Acyl-[acyl-carrier-protein] synthetase (n-C14:1) GAP
__Ecoli_panGEMs__AACPS3 Acyl-[acyl-carrier-protein] synthetase (n-C16:0) GAP
__Ecoli_panGEMs__AACPS4 Acyl-[acyl-carrier-protein] synthetase (n-C16:1) GAP
HOPNTAL 4-hydroxy-2-oxopentanoate aldolase GAP
3HPPPNH 3-(3-hydroxy-phenyl)propionate hydroxylase GAP
AKGDH 2-Oxogluterate dehydrogenase GAP
DCTPD dCTP deaminase GAP
AMANK N-acetyl-D-mannosamine kinase GAP
__Ecoli_panGEMs__UAGAAT UDP-N-acetylglucosamine acyltransferase GAP
HISTD histidinol dehydrogenase GAP
BPNT 3',5'-bisphosphate nucleotidase GAP
ASAD aspartate-semialdehyde dehydrogenase GAP
GPDDA1 Glycerophosphodiester phosphodiesterase (Glycerophosphocholine) GAP
GPDDA2 Glycerophosphodiester phosphodiesterase (Glycerophosphoethanolamine) GAP
DXYLK 1-Deoxy-D-xylulose kinase GAP
SGSAD Succinylglutamic semialdehyde dehydrogenase GAP
GPDDA5 Glycerophosphodiester phosphodiesterase (Glycerophosphoinositol) GAP
SULR sulfite reductase (NADPH2) GAP
AMANAPEr N-acetylmannosamine 6-phosphate epimerase GAP
MI1PP myo-inositol 1-phosphatase GAP
PPM2 phosphopentomutase 2 (deoxyribose) GAP
CBPS carbamoyl-phosphate synthase (glutamine-hydrolysing) GAP
__Ecoli_panGEMs__ACOATA Acetyl-CoA ACP transacylase GAP
SUCptspp sucrose transport via PEP:Pyr (periplasm) GAP
__Ecoli_panGEMs__TSULabcpp Thiosulfate transport via ABC system (periplasm) GAP
DDGALK 2-dehydro-3-deoxygalactonokinase GAP
TAURabcpp taurine transport via ABC system (periplasm) GAP
3HCINNMH 3-hydroxycinnamate hydroxylase GAP
THMabcpp thiamine transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__FDMO FMNH2-dependent monooxygenase GAP
CBL1abcpp Cob(1)alamin transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__FEENTERabcpp Fe-enterobactin transport via ABC system (periplasm) GAP
ALLabcpp D-allose transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__FE3DCITabcpp Iron transport from ferric-dicitrate via ABC system (periplasm) GAP
CHLabcpp choline transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__FE3DCITtonex Ferric-dicitrate transport via ton system (extracellular) GAP
CYSabcpp L-cysteine uptake via ABC system (periplasm) GAP
SBTptspp D-sorbitol transport via PEP:Pyr PTS (periplasm) GAP
__Ecoli_panGEMs__FDMO3 FMNH2-dependent monooxygenase (ethanesulfonate) GAP
__Ecoli_panGEMs__FDMO4 FMNH2-dependent monooxygenase (butanesulfonate) GAP
CYSabc2pp L-cysteine export via ABC system (cytoplasm to periplasm) GAP
__Ecoli_panGEMs__O16GLCT1 Glucosyltransferase I (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AP2pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP3pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16A4Lpp O16 anitgen (x4) ligase (periplasm) GAP
FEENTERtpp enterochelin transport (secretion) GAP
__Ecoli_panGEMs__FDMO6 FMNH2-dependent monooxygenase (sulfoacetate) GAP
PHEMEabcpp protoheme transport via ABC system (periplasm) GAP
GGGABADr gamma-glutamyl-gamma aminobutyric acid dehydrogenase GAP
__Ecoli_panGEMs__ECA4OALpp Enterobacterial common antigen (x4) O-antigen ligase (periplasm) GAP
HG2abcpp Mercury (Hg+2) ABC transporter (periplasm) GAP
__Ecoli_panGEMs__HEPT4 Heptosyltransferase IV (LPS core synthesis) GAP
NHFRBO NADH:flavorubredoxin oxidoreductase GAP
__Ecoli_panGEMs__FDMO2 FMNH2-dependent monooxygenase (methanesulfonate) GAP
R15BPK ribose-1,5-bisphosphokinase GAP
Kabcpp Potassium ABC transporter (periplasm) GAP
CBIuabcpp Cobinamide transport via ABC system (uptake, periplasm) GAP
IDONt2rpp L-idonate transport via proton symport, reversible (periplasm) GAP
PROt4pp Na+/Proline-L symporter (periplasm) GAP
ADOCBLabcpp Adenosylcobalamin transport via ABC system (periplasm) GAP
ALLPI Allose 6-phosphate isomerase GAP
ALLK Allose kinase GAP
ALLULPE Allulose 6-phosphate epimerase GAP
__Ecoli_panGEMs__O16AT Rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate O-acetyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16GALFT Galactofuranosyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AUNDtpp O16 antigen (flippase, cytoplasm to periplasm) GAP
__Ecoli_panGEMs__O16AP1pp O16 antigen polymerase (periplasm) GAP
CU2abcpp Copper (Cu+2) ABC transporter (periplasm) GAP
COBALT2abcpp Cobalt (Co+2) ABC transporter (periplasm) GAP
NI2abcpp Nickle (Ni+2) ABC transporter (periplasm) GAP
HCYSMT2 Homocysteine Methyltransferase GAP
FALDH2 formaldehyde dehydrogenase GAP
MMETt2pp S-methylmethionine permease (periplasm) GAP
ACGK acetylglutamate kinase GAP
FHL Formate-hydrogen lyase GAP
GALTptspp Galactitol transport via PEP:Pyr PTS (periplasm) GAP
ZN2abcpp Zinc (Zn+2) ABC transporter, efflux (periplasm) GAP
__Ecoli_panGEMs__DAAD D-Amino acid dehydrogenase GAP
__Ecoli_panGEMs__ACMUMptspp N-acetylmuramate transport via PEP:Pyr PTS (periplasm) GAP
HSTPT histidinol-phosphate transaminase GAP
GLUSy glutamate synthase (NADPH) GAP
__Ecoli_panGEMs__AACPS5 Acyl-[acyl-carrier-protein] synthetase (n-C18:1) GAP
CD2abcpp Cadmium (Cd+2) ABC transporter (periplasm) GAP
__Ecoli_panGEMs__RHAT1 Rhamnosyltransferase I (LPS core biosynthesis) GAP
GPDDA4 Glycerophosphodiester phosphodiesterase (Glycerophosphoglycerol) GAP
__Ecoli_panGEMs__AACPS8 Acyl-[acyl-carrier-protein] synthetase (n-C10:0) GAP
__Ecoli_panGEMs__AACPS9 Acyl-[acyl-carrier-protein] synthetase (n-C8:0) GAP
__Ecoli_panGEMs__AACPS6 Acyl-[acyl-carrier-protein] synthetase (n-C18:0) GAP
__Ecoli_panGEMs__AACPS7 Acyl-[acyl-carrier-protein] synthetase (n-C12:0) GAP
PROGLYabcpp L-Prolinylglycine (Pro-Gly) transport via ABC system (periplasm) GAP
GTHRDabcpp Reduced glutathione via ABC system (periplasm) GAP
AICART phosphoribosylaminoimidazolecarboxamide formyltransferase GAP
GGPTRCO gamma glutamyl putrescine oxidase GAP
GLYCK glycerate kinase GAP
GPDDA3 Glycerophosphodiester phosphodiesterase (Glycerophosphoserine) GAP
__Ecoli_panGEMs__G3PAT141 Glycerol-3-phosphate acyltransferase (C14:1) GAP
__Ecoli_panGEMs__G3PAT181 Glycerol-3-phosphate acyltransferase (C18:1) GAP
SUCDi succinate dehydrogenase (irreversible) GAP
__Ecoli_panGEMs__FADRx2 FAD reductase GAP
GTHRDHpp glutathione hydralase (periplasmic) GAP
__Ecoli_panGEMs__G3PAT140 Glycerol-3-phosphate acyltransferase (C14:0) GAP
__Ecoli_panGEMs__G3PAT160 Glycerol-3-phosphate acyltransferase (C16:0) GAP
__Ecoli_panGEMs__G3PAT161 Glycerol-3-phosphate acyltransferase (C16:1) GAP
__Ecoli_panGEMs__G3PAT180 Glycerol-3-phosphate acyltransferase (C18:0) GAP
CGLYabcpp L-Cysteinylglycine (Cys-Gly) transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__G3PAT120 Glycerol-3-phosphate acyltransferase (C12:0) GAP
GTHRDabc2pp glutathione export via ABC system (cytoplasm to periplasm) GAP
NADH18pp NADH dehydrogenase (demethylmenaquinone-8 & 3 protons) (periplasm) GAP
5DGLCNt2rpp 5-Dehydro-D-gluconate transport via proton symport, reversible (periplasm) GAP
NADH17pp NADH dehydrogenase (menaquinone-8 & 3 protons) (periplasm) GAP
PPAt4pp Na+/Propionate symporter (periplasm) GAP
3AMACHYD 3-aminoacrylate hydrolase GAP
__Ecoli_panGEMs__ACPPAT140 Acyl-(acyl carrier protein):phosphate acyltransferase (C14:0) GAP
__Ecoli_panGEMs__ACPPAT141 Acyl-(acyl carrier protein):phosphate acyltransferase (C14:1) GAP
__Ecoli_panGEMs__ACPPAT161 Acyl-(acyl carrier protein):phosphate acyltransferase (C16:1) GAP
__Ecoli_panGEMs__ACPPAT180 Acyl-(acyl carrier protein):phosphate acyltransferase (C18:0) GAP
__Ecoli_panGEMs__BMOCOS Bis-molybdenum cofactor synthase GAP
__Ecoli_panGEMs__BWCOS Tungsten bispterin cofactor synthase GAP
__Ecoli_panGEMs__ACPPAT120 Acyl-(acyl carrier protein):phosphate acyltransferase (C12:0) GAP
__Ecoli_panGEMs__WCOS Tungsten pterin cofactor synthase GAP
NADPHXD NADPHX dehydratase GAP
NADPHXE NADPHX epimerase GAP
3OXCOAT 3-oxoadipyl-CoA thiolase GAP
__Ecoli_panGEMs__DHBSZ3FEabcpp 23dhbsz3 Fe III transport via ABC system periplasm GAP
DXYLTD D-xylonate dehydratase GAP
2DDARAA 2-dehydro-3-deoxy-D-arabinonate Aldolase GAP
__Ecoli_panGEMs__ACPPAT160 Acyl-(acyl carrier protein):phosphate acyltransferase (C16:0) GAP
OMPHHXy 2-octaprenyl-6-methoxyphenol hydroxylase (NADPH) GAP
__Ecoli_panGEMs__ACPPAT181 Acyl-(acyl carrier protein):phosphate acyltransferase (C18:1) GAP
6D6SPA 6-deoxy-6-sulfofructose-1-phosphate aldolase GAP
TRPtipp L-tryptophan transport out (periplasm) GAP
TYRtipp L-tyrosine transport out (periplasm) GAP
__Ecoli_panGEMs__GHBDHx Gamma-hydroxybutyrate dehydrogenase (NADH) GAP
PHEtipp L-phenylalanine transport out (periplasm) GAP
G2PP glycerol-2-phosphate phosphatase GAP
SHGO S-2-hydroxyglutarate oxidase GAP
NADHXD NADHX dehydratase GAP
NADHXE NADHX epimerase GAP
SELabcpp selenatenate transport via ABC system (periplasm) GAP
SEPHCHCS 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase GAP
DHNCOAS 1,4-dihydroxy-2-napthoyl-CoA synthase GAP
__Ecoli_panGEMs__PUACGAMtr Transport of poly-?-1,6-N-acetyl-D-glucosamine (poly-?-1,6-N-acetyl-D-glucosamine synthase) GAP
5DGLCNR 5-dehydro-D-gluconate reductase GAP
__Ecoli_panGEMs__PUACGAMS Poly-?-1,6-N-acetyl-D-glucosamine synthase GAP
RU5PP Ribulose-5-Phosphate Phosphatase GAP
3SLAR 3-sulfolactaldehyde reductase GAP
CPL carbon-phosphorous lyase GAP
__Ecoli_panGEMs__THZPSN3 Thiazole phosphate synthesis GAP
AMPNTAT aminoalkylphosphonate N-acetyltransferase GAP
SQGH sulfoquinovosidase GAP
ARMEPNS ?-D-ribose 1-methylphosphonate 5-triphosphate synthase GAP
RPNTPH RPnTP hydrolase GAP
PRCPD 5-phospho-?-D-ribosyl 1,2-cyclic phosphate phosphodiesterase GAP
MEPNabcpp methylpshophonic acid abc transporter GAP
PROD3 Proline dehydrogenase (q8) GAP
3HPADHi 3-Hydroxypropanal Dehydrogenase GAP
SLNTabcpp selenite ABC transporter (periplasm) GAP
PACCOAE ring 1,2-phenylacetyl-CoA epoxidase (NADPH) GAP
OXDHCOAT 3-oxo-5,6-dehydrosuberyl-CoA thiolase GAP
PYROX pyrimidine oxygenase GAP
__Ecoli_panGEMs__MOCOS Molybdenum cofactor synthase GAP