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Gene
GAP
Associated reactions
  BiGG ID Name Gene reaction rule
DHAD2 Dihydroxy-acid dehydratase (2,3-dihydroxy-3-methylpentanoate) GAP
ANS anthranilate synthase GAP
POX pyruvate oxidase GAP
UPPDC1 uroporphyrinogen decarboxylase (uroporphyrinogen III) GAP
PUNP7 purine-nucleoside phosphorylase (Xanthosine) GAP
DHAD1 dihydroxy-acid dehydratase (2,3-dihydroxy-3-methylbutanoate) GAP
ABTA 4-aminobutyrate transaminase GAP
GLXCL glyoxalate carboligase GAP
SUCBZS O-succinylbenzoate-CoA synthase GAP
__Ecoli_panGEMs__GLCS1 Glycogen synthase (ADPGlc) GAP
HCYSMT homocysteine S-methyltransferase GAP
UDPG4E UDPglucose 4-epimerase GAP
LACZ b-galactosidase GAP
PPC phosphoenolpyruvate carboxylase GAP
CITL Citrate lyase GAP
__Ecoli_panGEMs__AACPS1 Acyl-[acyl-carrier-protein] synthetase (n-C14:0) GAP
UDPGALM UDPgalactopyranose mutase GAP
TDPDRE dTDP-4-dehydrorhamnose 3,5-epimerase GAP
TDPDRR dTDP-4-dehydrorhamnose reductase GAP
DDPGALA 2-dehydro-3-deoxy-6-phosphogalactonate aldolase GAP
IDOND L-idonate 5-dehydrogenase GAP
IDOND2 L-indonate 5-dehydrogenase (NADP) GAP
ADD adenine deaminase GAP
KDOPS 3-deoxy -D-manno-octulosonic -acid 8-phosphate synthase GAP
__Ecoli_panGEMs__MCOATA Malonyl-CoA-ACP transacylase GAP
HSK homoserine kinase GAP
P5CD 1-pyrroline-5-carboxylate dehydrogenase GAP
BETALDHx betaine-aldehyde dehydrogenase GAP
BETALDHy betaine-aldehyde dehydrogenase GAP
__Ecoli_panGEMs__AACPS2 Acyl-[acyl-carrier-protein] synthetase (n-C14:1) GAP
__Ecoli_panGEMs__AACPS3 Acyl-[acyl-carrier-protein] synthetase (n-C16:0) GAP
__Ecoli_panGEMs__AACPS4 Acyl-[acyl-carrier-protein] synthetase (n-C16:1) GAP
OP4ENH 2-oxopent-4-enoate hydratase GAP
HOPNTAL 4-hydroxy-2-oxopentanoate aldolase GAP
P5CR pyrroline-5-carboxylate reductase GAP
DCTPD dCTP deaminase GAP
AMANK N-acetyl-D-mannosamine kinase GAP
__Ecoli_panGEMs__UAGAAT UDP-N-acetylglucosamine acyltransferase GAP
SERAT serine O-acetyltransferase GAP
DXYLK 1-Deoxy-D-xylulose kinase GAP
SULR sulfite reductase (NADPH2) GAP
MANPGH 2-O-alpha-mannosyl-6-phosphate-D-glycerate hydrolase GAP
CBPS carbamoyl-phosphate synthase (glutamine-hydrolysing) GAP
__Ecoli_panGEMs__ACOATA Acetyl-CoA ACP transacylase GAP
SERASr (L-seryl)adenylate synthase GAP
SUCptspp sucrose transport via PEP:Pyr (periplasm) GAP
__Ecoli_panGEMs__TSULabcpp Thiosulfate transport via ABC system (periplasm) GAP
DDGALK 2-dehydro-3-deoxygalactonokinase GAP
TAURabcpp taurine transport via ABC system (periplasm) GAP
PACCOAL phenylacetate-CoA ligase GAP
XYLt2pp D-xylose transport in via proton symport (periplasm) GAP
THMabcpp thiamine transport via ABC system (periplasm) GAP
THMDt2pp thymidine transport in via proton symport (periplasm) GAP
THRabcpp L-threonine transport via ABC system (periplasm) GAP
URIt2pp uridine transport in via proton symport (periplasm) GAP
VALabcpp L-valine transport via ABC system (periplasm) GAP
XTSNt2rpp Xanthosine transport via proton symport (periplasm) GAP
__Ecoli_panGEMs__FDMO FMNH2-dependent monooxygenase GAP
__Ecoli_panGEMs__FEOXAMabcpp Ferroxamine transport via ABC system (periplasm) GAP
CBL1abcpp Cob(1)alamin transport via ABC system (periplasm) GAP
DRPA deoxyribose-phosphate aldolase GAP
__Ecoli_panGEMs__FEENTERabcpp Fe-enterobactin transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__FECRMabcpp Ferrichrome transport via ABC system (periplasm) GAP
ADNt2pp adenosine transport in via proton symport (periplasm) GAP
ALAabcpp L-alanine transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__FE3DCITabcpp Iron transport from ferric-dicitrate via ABC system (periplasm) GAP
CHLabcpp choline transport via ABC system (periplasm) GAP
CYTDt2pp cytidine transport in via proton symport (periplasm) GAP
__Ecoli_panGEMs__FDMO3 FMNH2-dependent monooxygenase (ethanesulfonate) GAP
__Ecoli_panGEMs__FDMO4 FMNH2-dependent monooxygenase (butanesulfonate) GAP
CYSabc2pp L-cysteine export via ABC system (cytoplasm to periplasm) GAP
__Ecoli_panGEMs__O16GLCT1 Glucosyltransferase I (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AP2pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP3pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16A4Lpp O16 anitgen (x4) ligase (periplasm) GAP
FRULYSK Fructoselysine Kinase GAP
__Ecoli_panGEMs__FDMO6 FMNH2-dependent monooxygenase (sulfoacetate) GAP
PHEMEabcpp protoheme transport via ABC system (periplasm) GAP
GGGABADr gamma-glutamyl-gamma aminobutyric acid dehydrogenase GAP
__Ecoli_panGEMs__ECA4OALpp Enterobacterial common antigen (x4) O-antigen ligase (periplasm) GAP
__Ecoli_panGEMs__GLCTR3 Glucosyltransferase III (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPT4 Heptosyltransferase IV (LPS core synthesis) GAP
NHFRBO NADH:flavorubredoxin oxidoreductase GAP
42A12BOOXpp 4-(2-Aminoethyl)-1,2-benzenediol:oxygen oxidoreductase(deaminating)(flavin-containing) GAP
TYROXDApp Tyramine:oxygen oxidoreductase(deaminating)(flavin-containing) (periplasm) GAP
__Ecoli_panGEMs__FDMO2 FMNH2-dependent monooxygenase (methanesulfonate) GAP
AGt3 silver transport out via proton antiport GAP
R15BPK ribose-1,5-bisphosphokinase GAP
Kabcpp Potassium ABC transporter (periplasm) GAP
LEUabcpp L-leucine transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__CPGNabcpp Coprogen transport via ABC system (periplasm) GAP
MANGLYCptspp 2-O-alpha-mannosyl-D-glycerate transport via PEP:Pyr PTS (periplasm) GAP
CBIuabcpp Cobinamide transport via ABC system (uptake, periplasm) GAP
3KGK 3-keto-L-gulonate kinase GAP
FRULYSDG Fructoselysine phosphate deglycase GAP
IDONt2rpp L-idonate transport via proton symport, reversible (periplasm) GAP
ILEabcpp L-isoleucine transport via ABC system (periplasm) GAP
PROt4pp Na+/Proline-L symporter (periplasm) GAP
ADOCBLabcpp Adenosylcobalamin transport via ABC system (periplasm) GAP
PEAMNOpp Phenethylamine oxidase GAP
FRUURt2rpp D-fructuronate transport via proton symport, reversible (periplasm) GAP
__Ecoli_panGEMs__O16AT Rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate O-acetyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16GALFT Galactofuranosyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AUNDtpp O16 antigen (flippase, cytoplasm to periplasm) GAP
__Ecoli_panGEMs__O16AP1pp O16 antigen polymerase (periplasm) GAP
HCYSMT2 Homocysteine Methyltransferase GAP
MMETt2pp S-methylmethionine permease (periplasm) GAP
FHL Formate-hydrogen lyase GAP
GALTptspp Galactitol transport via PEP:Pyr PTS (periplasm) GAP
GLYC3Pabcpp sn-Glycerol 3-phosphate transport via ABC system (periplasm) GAP
PTRCORNt7pp putrescine/ornithine antiporter (periplasm) GAP
__Ecoli_panGEMs__ACMUMptspp N-acetylmuramate transport via PEP:Pyr PTS (periplasm) GAP
HSTPT histidinol-phosphate transaminase GAP
__Ecoli_panGEMs__ARBTNabcpp Aerobactin transport via ABC system (periplasm) GAP
GLUSy glutamate synthase (NADPH) GAP
__Ecoli_panGEMs__AACPS5 Acyl-[acyl-carrier-protein] synthetase (n-C18:1) GAP
GTHS glutathione synthetase GAP
__Ecoli_panGEMs__MOAT3C 3-deoxy-D-manno-octulosonic acid transferase III (LPS core biosynthesis) GAP
CUt3 copper transport out via proton antiport GAP
__Ecoli_panGEMs__RHAT1 Rhamnosyltransferase I (LPS core biosynthesis) GAP
__Ecoli_panGEMs__GALT1 Galactosyltransferase I (LPS core synthesis) GAP
__Ecoli_panGEMs__GLCTR2 Glucosyltransferase II (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPK2 LPS heptose kinase II (LPS core synthesis) GAP
__Ecoli_panGEMs__AACPS8 Acyl-[acyl-carrier-protein] synthetase (n-C10:0) GAP
__Ecoli_panGEMs__AACPS9 Acyl-[acyl-carrier-protein] synthetase (n-C8:0) GAP
__Ecoli_panGEMs__AACPS6 Acyl-[acyl-carrier-protein] synthetase (n-C18:0) GAP
__Ecoli_panGEMs__AACPS7 Acyl-[acyl-carrier-protein] synthetase (n-C12:0) GAP
G3PGabcpp sn-glycerol-3-phosphoglycerol transport via ABC system (periplasm) GAP
G3PIabcpp sn-glycerol-3-phosphoethanolamine transport via ABC system (periplasm) GAP
G3PSabcpp sn-glycerol-3-phosphoserine transport via ABC system (periplasm) GAP
G3PEabcpp sn-glycerol-3-phosphoethanolamine transport via ABC system (periplasm) GAP
G3PCabcpp sn-glycerol-3-phosphocholine transport via ABC system (periplasm) GAP
PROGLYabcpp L-Prolinylglycine (Pro-Gly) transport via ABC system (periplasm) GAP
GGPTRCO gamma glutamyl putrescine oxidase GAP
GLYCK glycerate kinase GAP
__Ecoli_panGEMs__G3PAT141 Glycerol-3-phosphate acyltransferase (C14:1) GAP
__Ecoli_panGEMs__G3PAT181 Glycerol-3-phosphate acyltransferase (C18:1) GAP
__Ecoli_panGEMs__FE3HOXabcpp Ferric-dicitrate transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__FADRx2 FAD reductase GAP
__Ecoli_panGEMs__G3PAT140 Glycerol-3-phosphate acyltransferase (C14:0) GAP
__Ecoli_panGEMs__G3PAT160 Glycerol-3-phosphate acyltransferase (C16:0) GAP
__Ecoli_panGEMs__G3PAT161 Glycerol-3-phosphate acyltransferase (C16:1) GAP
__Ecoli_panGEMs__G3PAT180 Glycerol-3-phosphate acyltransferase (C18:0) GAP
CGLYabcpp L-Cysteinylglycine (Cys-Gly) transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__G3PAT120 Glycerol-3-phosphate acyltransferase (C12:0) GAP
GTHRDabc2pp glutathione export via ABC system (cytoplasm to periplasm) GAP
__Ecoli_panGEMs__UM4PL UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate-D-alanine ligase GAP
NADH18pp NADH dehydrogenase (demethylmenaquinone-8 & 3 protons) (periplasm) GAP
5DGLCNt2rpp 5-Dehydro-D-gluconate transport via proton symport, reversible (periplasm) GAP
NADH17pp NADH dehydrogenase (menaquinone-8 & 3 protons) (periplasm) GAP
PPAt4pp Na+/Propionate symporter (periplasm) GAP
FRULYSE fructoselysine 3-epimerase GAP
FRULYSt2pp Fructoselysine transport via proton symport (periplasm) GAP
PSCLYSt2pp psicoselysine transport via proton symport (periplasm) GAP
3AMACHYD 3-aminoacrylate hydrolase GAP
__Ecoli_panGEMs__ACPPAT140 Acyl-(acyl carrier protein):phosphate acyltransferase (C14:0) GAP
REPHACCOAI ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming) GAP
__Ecoli_panGEMs__ACPPAT141 Acyl-(acyl carrier protein):phosphate acyltransferase (C14:1) GAP
__Ecoli_panGEMs__ACPPAT161 Acyl-(acyl carrier protein):phosphate acyltransferase (C16:1) GAP
__Ecoli_panGEMs__ACPPAT180 Acyl-(acyl carrier protein):phosphate acyltransferase (C18:0) GAP
__Ecoli_panGEMs__BMOCOS Bis-molybdenum cofactor synthase GAP
__Ecoli_panGEMs__BWCOS Tungsten bispterin cofactor synthase GAP
__Ecoli_panGEMs__DHNPTE Dihydroneopterin epimerase GAP
OXCOAHDH oxepin-CoA hydrolase/ 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase (NADP+) GAP
DHACOAH 2,3-dehydroadipyl-CoA hydratase GAP
__Ecoli_panGEMs__ACPPAT120 Acyl-(acyl carrier protein):phosphate acyltransferase (C12:0) GAP
__Ecoli_panGEMs__LIPATPT Lipoate-ATP adenylate transferase GAP
__Ecoli_panGEMs__LIPAMPL Lipoyl-adenylate protein ligase GAP
ALDD19xr aldehyde dehydrogenase (phenylacetaldehyde, NAD) GAP
__Ecoli_panGEMs__WCOS Tungsten pterin cofactor synthase GAP
NADPHXD NADPHX dehydratase GAP
NADPHXE NADPHX epimerase GAP
3OXCOAT 3-oxoadipyl-CoA thiolase GAP
__Ecoli_panGEMs__DHBSZ3FEabcpp 23dhbsz3 Fe III transport via ABC system periplasm GAP
DXYLTD D-xylonate dehydratase GAP
2DDARAA 2-dehydro-3-deoxy-D-arabinonate Aldolase GAP
__Ecoli_panGEMs__ACPPAT160 Acyl-(acyl carrier protein):phosphate acyltransferase (C16:0) GAP
CHLt3pp choline transport via proton antiport (periplasm) GAP
GLYBt3pp Glycine betaine transport via proton antiport (periplasm) GAP
__Ecoli_panGEMs__ACPPAT181 Acyl-(acyl carrier protein):phosphate acyltransferase (C18:1) GAP
TRPtipp L-tryptophan transport out (periplasm) GAP
TYRtipp L-tyrosine transport out (periplasm) GAP
PHEtipp L-phenylalanine transport out (periplasm) GAP
__Ecoli_panGEMs__DHNPA2r Dihydroneopterin aldolase reversible GAP
GLYC2Pabcpp sn-Glycerol 2-phosphate transport via ABC system (periplasm) GAP
SHGO S-2-hydroxyglutarate oxidase GAP
NADHXD NADHX dehydratase GAP
NADHXE NADHX epimerase GAP
SELabcpp selenatenate transport via ABC system (periplasm) GAP
PACOAT phenylacetyl-CoA thioesterase GAP
SEPHCHCS 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase GAP
DHNCOAS 1,4-dihydroxy-2-napthoyl-CoA synthase GAP
HPACOAT hydroxyphenylacetyl-CoA thioesterase GAP
__Ecoli_panGEMs__PUACGAMtr Transport of poly-?-1,6-N-acetyl-D-glucosamine (poly-?-1,6-N-acetyl-D-glucosamine synthase) GAP
5DGLCNR 5-dehydro-D-gluconate reductase GAP
__Ecoli_panGEMs__PUACGAMS Poly-?-1,6-N-acetyl-D-glucosamine synthase GAP
__Ecoli_panGEMs__THZPSN3 Thiazole phosphate synthesis GAP
RHMND L-rhamnonate dehydratase GAP
4HTHRK 4-Hydroxy-L-threonine kinase GAP
SQGH sulfoquinovosidase GAP
ARMEPNS ?-D-ribose 1-methylphosphonate 5-triphosphate synthase GAP
RPNTPH RPnTP hydrolase GAP
MEPNabcpp methylpshophonic acid abc transporter GAP
OMMBLHXy 2-Octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (NADPHl) GAP
PROD3 Proline dehydrogenase (q8) GAP
3HPADHi 3-Hydroxypropanal Dehydrogenase GAP
SLNTabcpp selenite ABC transporter (periplasm) GAP
PACCOAE ring 1,2-phenylacetyl-CoA epoxidase (NADPH) GAP
OXDHCOAT 3-oxo-5,6-dehydrosuberyl-CoA thiolase GAP
HADPCOADH3 3-hydroxyadipyl-CoA dehydrogenase (NAD+) GAP
__Ecoli_panGEMs__MOCOS Molybdenum cofactor synthase GAP
__Ecoli_panGEMs__OCTNLL Octanoate non-lipoylated apo domain ligase GAP