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Gene
GAP
Associated reactions
  BiGG ID Name Gene reaction rule
PUNP7 purine-nucleoside phosphorylase (Xanthosine) GAP
__Ecoli_panGEMs__RNDR1 Ribonucleoside-diphosphate reductase (ADP) GAP
__Ecoli_panGEMs__RNDR3 Ribonucleoside-diphosphate reductase (CDP) GAP
__Ecoli_panGEMs__RNDR4 Ribonucleoside-diphosphate reductase (UDP) GAP
G3PD7 glycerol-3-phosphate dehydrogenase (demethylmenaquinone-8) GAP
ICHORS isochorismate synthase GAP
SUCBZS O-succinylbenzoate-CoA synthase GAP
HCYSMT homocysteine S-methyltransferase GAP
DMQMT 3-Dimethylubiquinonol 3-methyltransferase GAP
OHPHM 2-octaprenyl-6-hydroxyphenol methylase GAP
BUTCT Acetyl-CoA:butyrate-CoA transferase GAP
UDPGALM UDPgalactopyranose mutase GAP
TDPDRE dTDP-4-dehydrorhamnose 3,5-epimerase GAP
G3PD6 glycerol-3-phosphate dehydrogenase (menaquinone-8) GAP
IDOND L-idonate 5-dehydrogenase GAP
IDOND2 L-indonate 5-dehydrogenase (NADP) GAP
FRUK fructose-1-phosphate kinase GAP
CYTD cytidine deaminase GAP
DCYTD deoxycytidine deaminase GAP
MDH3 Malate dehydrogenase (menaquinone 8 as acceptor) GAP
MDH2 Malate dehydrogenase (ubiquinone 8 as acceptor) GAP
PMPK phosphomethylpyrimidine kinase GAP
__Ecoli_panGEMs__NO3R2bpp Nitrate reductase (Menaquinol-8) (periplasm) GAP
THMDt2pp thymidine transport in via proton symport (periplasm) GAP
URIt2pp uridine transport in via proton symport (periplasm) GAP
XTSNt2rpp Xanthosine transport via proton symport (periplasm) GAP
GTPCI GTP cyclohydrolase I GAP
ACACt2pp acetoacetate transport via proton symport (periplasm) GAP
ADNt2pp adenosine transport in via proton symport (periplasm) GAP
ALLabcpp D-allose transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__FE3DCITabcpp Iron transport from ferric-dicitrate via ABC system (periplasm) GAP
CHLabcpp choline transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__FE3DCITtonex Ferric-dicitrate transport via ton system (extracellular) GAP
FRUptspp D-fructose transport via PEP:Pyr PTS (periplasm) GAP
FUCtpp L-fucose transport via proton symport (periplasm) GAP
CYTDt2pp cytidine transport in via proton symport (periplasm) GAP
__Ecoli_panGEMs__O16GLCT1 Glucosyltransferase I (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AP2pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP3pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16A4Lpp O16 anitgen (x4) ligase (periplasm) GAP
BUTt2rpp Butyrate transport via proton symport, reversible (periplasm) GAP
PHEMEabcpp protoheme transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__ECA4OALpp Enterobacterial common antigen (x4) O-antigen ligase (periplasm) GAP
__Ecoli_panGEMs__GLCTR3 Glucosyltransferase III (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPT4 Heptosyltransferase IV (LPS core synthesis) GAP
__Ecoli_panGEMs__LA4NTpp 4-amino-4-deoxy-L-arabinotransferase (LPS lipid A modification, periplasmic face of membrane)) GAP
LACZpp b-galactosidase GAP
GPDDA1pp Glycerophosphodiester phosphodiesterase (Glycerophosphocholine) GAP
GPDDA5pp Glycerophosphodiester phosphodiesterase (Glycerophosphoinositol) GAP
IDONt2rpp L-idonate transport via proton symport, reversible (periplasm) GAP
ALLPI Allose 6-phosphate isomerase GAP
ALLULPE Allulose 6-phosphate epimerase GAP
__Ecoli_panGEMs__O16AT Rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate O-acetyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16GALFT Galactofuranosyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AUNDtpp O16 antigen (flippase, cytoplasm to periplasm) GAP
__Ecoli_panGEMs__O16AP1pp O16 antigen polymerase (periplasm) GAP
GPDDA3pp Glycerophosphodiester phosphodiesterase (Glycerophosphoserine) GAP
GPDDA4pp Glycerophosphodiester phosphodiesterase (Glycerophosphoglycerol) GAP
GPDDA2pp Glycerophosphodiester phosphodiesterase (Glycerophosphoethanolamine) GAP
__Ecoli_panGEMs__4PCPpp Tetrapeptide L,D-carboxypeptidase (periplasm) GAP
HCYSMT2 Homocysteine Methyltransferase GAP
GLYC3Pt6pp Glycerol-3-phosphate : phosphate antiporter (periplasm) GAP
MMETt2pp S-methylmethionine permease (periplasm) GAP
GALTptspp Galactitol transport via PEP:Pyr PTS (periplasm) GAP
__Ecoli_panGEMs__AGM4PCPpp N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide L,D-carboxypeptidase (periplasmic) GAP
__Ecoli_panGEMs__RNDR2 Ribonucleoside-diphosphate reductase (GDP) GAP
UDPGDC UDP-glucuronate C-4'' decarboxylase GAP
ULA4NFT UDP-L-Ara4N formyltransferase GAP
__Ecoli_panGEMs__UPLA4FNT Undecaprenyl phosphate-L-Ara4FN transferase GAP
__Ecoli_panGEMs__UPLA4FNF Undecaprenyl phosphate-L-Ara4FN formylase GAP
__Ecoli_panGEMs__ULA4Ntppi Transport (cytoplasm to periplasm) GAP
__Ecoli_panGEMs__MOAT3C 3-deoxy-D-manno-octulosonic acid transferase III (LPS core biosynthesis) GAP
__Ecoli_panGEMs__RHAT1 Rhamnosyltransferase I (LPS core biosynthesis) GAP
GLCabcpp D-glucose transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__GALT1 Galactosyltransferase I (LPS core synthesis) GAP
__Ecoli_panGEMs__GLCTR2 Glucosyltransferase II (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPK2 LPS heptose kinase II (LPS core synthesis) GAP
LDH_D2 D-lactate dehydrogenase GAP
SUCBZL o-succinylbenzoate-CoA ligase GAP
HXCT Acetyl-CoA:hexanoate-CoA transferase GAP
DURADx dihydrouracil dehydrogenase (NAD) GAP
YUMPS yUMP synthetase GAP
HEXt2rpp hexanoate transport via proton symport, reversible (periplasm) GAP
NADH18pp NADH dehydrogenase (demethylmenaquinone-8 & 3 protons) (periplasm) GAP
5DGLCNt2rpp 5-Dehydro-D-gluconate transport via proton symport, reversible (periplasm) GAP
NADH17pp NADH dehydrogenase (menaquinone-8 & 3 protons) (periplasm) GAP
LYSt2pp L-lysine transport in via proton symport (periplasm) GAP
SHCHCS3 2-succinyl-6-hydroxy-2,4-cyclohexadiene 1-carboxylate synthase GAP
DXYLTD D-xylonate dehydratase GAP
2DDARAA 2-dehydro-3-deoxy-D-arabinonate Aldolase GAP
ALR2x aldose reductase (methylglyoxal) (nadh) GAP
CHLt3pp choline transport via proton antiport (periplasm) GAP
GLYBt3pp Glycine betaine transport via proton antiport (periplasm) GAP
SEPHCHCS 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase GAP
DHNCOAS 1,4-dihydroxy-2-napthoyl-CoA synthase GAP
5DGLCNR 5-dehydro-D-gluconate reductase GAP
LKDRA 2-keto-3-deoxy-L-rhamnonate aldolase GAP
PSURItpp pseudouridine transport via permease GAP
PSURIK pseudouridine kinase GAP
MEPNabcpp methylpshophonic acid abc transporter GAP