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Gene
GAP
Associated reactions
  BiGG ID Name Gene reaction rule
PUNP7 purine-nucleoside phosphorylase (Xanthosine) GAP
__Ecoli_panGEMs__RNDR1 Ribonucleoside-diphosphate reductase (ADP) GAP
__Ecoli_panGEMs__RNDR3 Ribonucleoside-diphosphate reductase (CDP) GAP
__Ecoli_panGEMs__RNDR4 Ribonucleoside-diphosphate reductase (UDP) GAP
G3PD7 glycerol-3-phosphate dehydrogenase (demethylmenaquinone-8) GAP
ICHORS isochorismate synthase GAP
SUCBZS O-succinylbenzoate-CoA synthase GAP
HCYSMT homocysteine S-methyltransferase GAP
DMQMT 3-Dimethylubiquinonol 3-methyltransferase GAP
OHPHM 2-octaprenyl-6-hydroxyphenol methylase GAP
BUTCT Acetyl-CoA:butyrate-CoA transferase GAP
UDPGALM UDPgalactopyranose mutase GAP
TDPDRE dTDP-4-dehydrorhamnose 3,5-epimerase GAP
G3PD6 glycerol-3-phosphate dehydrogenase (menaquinone-8) GAP
AOBUTDs L-2-amino-3-oxobutanoate decarboxylation (spontaneous) GAP
IDOND L-idonate 5-dehydrogenase GAP
IDOND2 L-indonate 5-dehydrogenase (NADP) GAP
HETZK_1 hydroxyethylthiazole kinase GAP
FRUK fructose-1-phosphate kinase GAP
G5SADs L-glutamate 5-semialdehyde dehydratase (spontaneous) GAP
CYTD cytidine deaminase GAP
DCYTD deoxycytidine deaminase GAP
MDH3 Malate dehydrogenase (menaquinone 8 as acceptor) GAP
MDH2 Malate dehydrogenase (ubiquinone 8 as acceptor) GAP
PMPK phosphomethylpyrimidine kinase GAP
__Ecoli_panGEMs__NO3R1bpp Nitrate reductase (Ubiquinol-8) GAP
O2tpp o2 transport via diffusion (periplasm) GAP
__Ecoli_panGEMs__NO3R2bpp Nitrate reductase (Menaquinol-8) (periplasm) GAP
THMDt2pp thymidine transport in via proton symport (periplasm) GAP
URIt2pp uridine transport in via proton symport (periplasm) GAP
XTSNt2rpp Xanthosine transport via proton symport (periplasm) GAP
GTPCI GTP cyclohydrolase I GAP
ACACt2pp acetoacetate transport via proton symport (periplasm) GAP
CO2tpp CO2 transporter via diffusion (periplasm) GAP
ADNt2pp adenosine transport in via proton symport (periplasm) GAP
ALLabcpp D-allose transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__FE3DCITabcpp Iron transport from ferric-dicitrate via ABC system (periplasm) GAP
CHLabcpp choline transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__FE3DCITtonex Ferric-dicitrate transport via ton system (extracellular) GAP
FRUptspp D-fructose transport via PEP:Pyr PTS (periplasm) GAP
FUCtpp L-fucose transport via proton symport (periplasm) GAP
CYTDt2pp cytidine transport in via proton symport (periplasm) GAP
ACALDtpp acetaldehyde reversible transport (periplasm) GAP
__Ecoli_panGEMs__O16GLCT1 Glucosyltransferase I (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AP2pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP3pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16A4Lpp O16 anitgen (x4) ligase (periplasm) GAP
BUTt2rpp Butyrate transport via proton symport, reversible (periplasm) GAP
PHEMEabcpp protoheme transport via ABC system (periplasm) GAP
DATPHs dATP amine hydrolysis (spontaneous) GAP
__Ecoli_panGEMs__ECA4OALpp Enterobacterial common antigen (x4) O-antigen ligase (periplasm) GAP
__Ecoli_panGEMs__GLCTR3 Glucosyltransferase III (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPT4 Heptosyltransferase IV (LPS core synthesis) GAP
__Ecoli_panGEMs__LA4NTpp 4-amino-4-deoxy-L-arabinotransferase (LPS lipid A modification, periplasmic face of membrane)) GAP
NOtpp NO transport (diffusion) GAP
N2Otpp nitrious oxide transport (diffusion) GAP
FALDtpp formaldehyde transport via diffusion (periplasm) GAP
__Ecoli_panGEMs__FECRMexs Ferrichrome Fe(III)-loading reaction (spontaneous) GAP
__Ecoli_panGEMs__ARBTNexs Aerobactin Fe-loading reaction (spontaneous) GAP
__Ecoli_panGEMs__FEOXAMexs Ferroxamine Fe3-loading reaction (spontaneous) GAP
LACZpp b-galactosidase GAP
GPDDA1pp Glycerophosphodiester phosphodiesterase (Glycerophosphocholine) GAP
GPDDA5pp Glycerophosphodiester phosphodiesterase (Glycerophosphoinositol) GAP
__Ecoli_panGEMs__FEENTERexs Enterobactin Fe(III) binding (spontaneous) GAP
__Ecoli_panGEMs__FE3HOXexs Fe(III) hydroxamate Fe-loading reaction (spontaneaous) GAP
__Ecoli_panGEMs__CPGNexs Coprogen Fe-loading reaction (spontaneaous) GAP
ATPHs ATP amine hydrolysis (spontaneous) GAP
GTPHs GTP amine hydrolysis (spontaneous) GAP
IDONt2rpp L-idonate transport via proton symport, reversible (periplasm) GAP
ALLPI Allose 6-phosphate isomerase GAP
ALLK Allose kinase GAP
ALLULPE Allulose 6-phosphate epimerase GAP
METOX1s methionine oxidation (spontaneous) GAP
METOX2s methionine oxidation 2 (spontaneous) GAP
__Ecoli_panGEMs__O16AT Rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate O-acetyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16GALFT Galactofuranosyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AUNDtpp O16 antigen (flippase, cytoplasm to periplasm) GAP
__Ecoli_panGEMs__O16AP1pp O16 antigen polymerase (periplasm) GAP
GPDDA3pp Glycerophosphodiester phosphodiesterase (Glycerophosphoserine) GAP
GPDDA4pp Glycerophosphodiester phosphodiesterase (Glycerophosphoglycerol) GAP
GPDDA2pp Glycerophosphodiester phosphodiesterase (Glycerophosphoethanolamine) GAP
__Ecoli_panGEMs__4PCPpp Tetrapeptide L,D-carboxypeptidase (periplasm) GAP
HCYSMT2 Homocysteine Methyltransferase GAP
GLYC3Pt6pp Glycerol-3-phosphate : phosphate antiporter (periplasm) GAP
MMETt2pp S-methylmethionine permease (periplasm) GAP
FALGTHLs formaldehyde glutathione ligase (spontaneous) GAP
GALTptspp Galactitol transport via PEP:Pyr PTS (periplasm) GAP
__Ecoli_panGEMs__AGM4PCPpp N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide L,D-carboxypeptidase (periplasmic) GAP
__Ecoli_panGEMs__RNDR2 Ribonucleoside-diphosphate reductase (GDP) GAP
OMCDC 2-Oxo-4-methyl-3-carboxypentanoate decarboxylation GAP
H2St1pp h2s transport (periplasm) GAP
UDPGDC UDP-glucuronate C-4'' decarboxylase GAP
UDPKAAT UDP-4''-ketopentose:UDP-4-amino-4-deoxy-L-arabinose aminotransferase GAP
ULA4NFT UDP-L-Ara4N formyltransferase GAP
__Ecoli_panGEMs__UPLA4FNT Undecaprenyl phosphate-L-Ara4FN transferase GAP
__Ecoli_panGEMs__UPLA4FNF Undecaprenyl phosphate-L-Ara4FN formylase GAP
__Ecoli_panGEMs__ULA4Ntppi Transport (cytoplasm to periplasm) GAP
__Ecoli_panGEMs__MOAT3C 3-deoxy-D-manno-octulosonic acid transferase III (LPS core biosynthesis) GAP
__Ecoli_panGEMs__RHAT1 Rhamnosyltransferase I (LPS core biosynthesis) GAP
GLCabcpp D-glucose transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__GALT1 Galactosyltransferase I (LPS core synthesis) GAP
__Ecoli_panGEMs__GLCTR2 Glucosyltransferase II (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPT3 Heptosyltransferase III (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPK2 LPS heptose kinase II (LPS core synthesis) GAP
SO2tpp SO2 transport via diffusion (periplasm) GAP
LDH_D2 D-lactate dehydrogenase GAP
SUCBZL o-succinylbenzoate-CoA ligase GAP
HXCT Acetyl-CoA:hexanoate-CoA transferase GAP
DURADx dihydrouracil dehydrogenase (NAD) GAP
YUMPS yUMP synthetase GAP
HEXt2rpp hexanoate transport via proton symport, reversible (periplasm) GAP
H2tpp hydrogen transport diffusion (periplasm) GAP
ACONIs aconitate isomerase (spontaneous) GAP
NADH16pp NADH dehydrogenase (ubiquinone-8 & 3 protons) (periplasm) GAP
NADH18pp NADH dehydrogenase (demethylmenaquinone-8 & 3 protons) (periplasm) GAP
5DGLCNt2rpp 5-Dehydro-D-gluconate transport via proton symport, reversible (periplasm) GAP
NADH17pp NADH dehydrogenase (menaquinone-8 & 3 protons) (periplasm) GAP
LYSt2pp L-lysine transport in via proton symport (periplasm) GAP
MTHTHFSs (2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran synthesis (spontaneous) GAP
RFAMPtex Rifampin transport via diffusion (extracellular to periplasm) GAP
MEOHtrpp Methanol reversible transport via diffusion (periplasm) GAP
ETOHtrpp ethanol reversible transport via diffusion (periplasm) GAP
CBMD carbamate deaminase GAP
__Ecoli_panGEMs__COLIPAKpp Lipid A core kinase (periplasm) GAP
SHCHCS3 2-succinyl-6-hydroxy-2,4-cyclohexadiene 1-carboxylate synthase GAP
DXYLTD D-xylonate dehydratase GAP
2DDARAA 2-dehydro-3-deoxy-D-arabinonate Aldolase GAP
DMSOtpp Dimethyl sulfoxide transport via diffusion (periplasm) GAP
__Ecoli_panGEMs__FE3DCITexs Dicitrate Fe(III) binding (spontaneous) GAP
ALR2x aldose reductase (methylglyoxal) (nadh) GAP
CHLt3pp choline transport via proton antiport (periplasm) GAP
GLYBt3pp Glycine betaine transport via proton antiport (periplasm) GAP
SEPHCHCS 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase GAP
DHNCOAS 1,4-dihydroxy-2-napthoyl-CoA synthase GAP
5DGLCNR 5-dehydro-D-gluconate reductase GAP
LKDRA 2-keto-3-deoxy-L-rhamnonate aldolase GAP
__Ecoli_panGEMs__FESD1s Iron-sulfur cluster damage (peroxide, spontaneous) GAP
PSURItpp pseudouridine transport via permease GAP
PSURIK pseudouridine kinase GAP
RHMND L-rhamnonate dehydratase GAP
DHGLYH Dehydroglycine Hydratase GAP
MEPNabcpp methylpshophonic acid abc transporter GAP
NOVBCNtex Novobiocin transport via diffusion (extracellular to periplasm) GAP
DHPTDCs2 4,5-dihydroxy-2,3-pentanedione cyclization (spontaneous) GAP
__Ecoli_panGEMs__FESD2s Iron-sulfur cluster damage (nitrous oxide, spontaneous) GAP