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Gene
GAP
Associated reactions
  BiGG ID Name Gene reaction rule
TRPAS2 Tryptophanase (L-tryptophan) GAP
HCYSMT homocysteine S-methyltransferase GAP
HPPK_1 6-hydroxymethyl-dihydropterin pyrophosphokinase GAP
GLTPD Galactitol-1-phosphate dehydrogenase GAP
UDPGALM UDPgalactopyranose mutase GAP
TDPDRE dTDP-4-dehydrorhamnose 3,5-epimerase GAP
TDPDRR dTDP-4-dehydrorhamnose reductase GAP
ALLTN allantoinase GAP
AOBUTDs L-2-amino-3-oxobutanoate decarboxylation (spontaneous) GAP
IDOND L-idonate 5-dehydrogenase GAP
IDOND2 L-indonate 5-dehydrogenase (NADP) GAP
BETALDHx betaine-aldehyde dehydrogenase GAP
BETALDHy betaine-aldehyde dehydrogenase GAP
G5SADs L-glutamate 5-semialdehyde dehydratase (spontaneous) GAP
URDGLYCD ureidoglycolate dehydrogenase GAP
AP4AH Ap4A hydrolase GAP
AP5AH Ap5A hydrolase GAP
PACCOAL phenylacetate-CoA ligase GAP
GP4GH Gp4G hydrolase GAP
O2tpp o2 transport via diffusion (periplasm) GAP
XYLUt2pp L-xylulose transport in via proton symport (periplasm) GAP
CHOLD choline dehydrogenase GAP
CO2tpp CO2 transporter via diffusion (periplasm) GAP
ALLTNt2rpp allantoin transport in via proton symport (periplasm) GAP
__Ecoli_panGEMs__FE3DCITabcpp Iron transport from ferric-dicitrate via ABC system (periplasm) GAP
CHLabcpp choline transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__FE3DCITtonex Ferric-dicitrate transport via ton system (extracellular) GAP
ACALDtpp acetaldehyde reversible transport (periplasm) GAP
__Ecoli_panGEMs__O16GLCT1 Glucosyltransferase I (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AP2pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP3pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16A4Lpp O16 anitgen (x4) ligase (periplasm) GAP
FRULYSK Fructoselysine Kinase GAP
DATPHs dATP amine hydrolysis (spontaneous) GAP
__Ecoli_panGEMs__ECA4OALpp Enterobacterial common antigen (x4) O-antigen ligase (periplasm) GAP
__Ecoli_panGEMs__GLCTR3 Glucosyltransferase III (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPT4 Heptosyltransferase IV (LPS core synthesis) GAP
NOtpp NO transport (diffusion) GAP
N2Otpp nitrious oxide transport (diffusion) GAP
42A12BOOXpp 4-(2-Aminoethyl)-1,2-benzenediol:oxygen oxidoreductase(deaminating)(flavin-containing) GAP
TYROXDApp Tyramine:oxygen oxidoreductase(deaminating)(flavin-containing) (periplasm) GAP
INOSTt4pp Na+/myo-inositol symporter (periplasm) GAP
FALDtpp formaldehyde transport via diffusion (periplasm) GAP
__Ecoli_panGEMs__FECRMexs Ferrichrome Fe(III)-loading reaction (spontaneous) GAP
__Ecoli_panGEMs__ARBTNexs Aerobactin Fe-loading reaction (spontaneous) GAP
__Ecoli_panGEMs__FEOXAMexs Ferroxamine Fe3-loading reaction (spontaneous) GAP
__Ecoli_panGEMs__FEENTERexs Enterobactin Fe(III) binding (spontaneous) GAP
__Ecoli_panGEMs__FE3HOXexs Fe(III) hydroxamate Fe-loading reaction (spontaneaous) GAP
SKMt2pp shikimate transport in via proton symport (periplasm) GAP
__Ecoli_panGEMs__CPGNexs Coprogen Fe-loading reaction (spontaneaous) GAP
ATPHs ATP amine hydrolysis (spontaneous) GAP
GTPHs GTP amine hydrolysis (spontaneous) GAP
3KGK 3-keto-L-gulonate kinase GAP
FRULYSDG Fructoselysine phosphate deglycase GAP
IDONt2rpp L-idonate transport via proton symport, reversible (periplasm) GAP
PEAMNOpp Phenethylamine oxidase GAP
METOX1s methionine oxidation (spontaneous) GAP
METOX2s methionine oxidation 2 (spontaneous) GAP
FRUURt2rpp D-fructuronate transport via proton symport, reversible (periplasm) GAP
__Ecoli_panGEMs__O16AT Rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate O-acetyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16GALFT Galactofuranosyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AUNDtpp O16 antigen (flippase, cytoplasm to periplasm) GAP
__Ecoli_panGEMs__O16AP1pp O16 antigen polymerase (periplasm) GAP
HCYSMT2 Homocysteine Methyltransferase GAP
MMETt2pp S-methylmethionine permease (periplasm) GAP
PPDOy Propane-1,2-diol:NADP+ 1-oxidoreductase GAP
FALGTHLs formaldehyde glutathione ligase (spontaneous) GAP
GALTptspp Galactitol transport via PEP:Pyr PTS (periplasm) GAP
OMCDC 2-Oxo-4-methyl-3-carboxypentanoate decarboxylation GAP
H2St1pp h2s transport (periplasm) GAP
HEPT1 heptosyltransferase I (LPS core synthesis) GAP
__Ecoli_panGEMs__MOAT3C 3-deoxy-D-manno-octulosonic acid transferase III (LPS core biosynthesis) GAP
__Ecoli_panGEMs__RHAT1 Rhamnosyltransferase I (LPS core biosynthesis) GAP
GLCabcpp D-glucose transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__GALT1 Galactosyltransferase I (LPS core synthesis) GAP
__Ecoli_panGEMs__GLCTR2 Glucosyltransferase II (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPT3 Heptosyltransferase III (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPK2 LPS heptose kinase II (LPS core synthesis) GAP
SO2tpp SO2 transport via diffusion (periplasm) GAP
DURADx dihydrouracil dehydrogenase (NAD) GAP
__Ecoli_panGEMs__ALPATE160pp Apolipoprotein N-acyltransferase (phosphatidylethanolamine, periplasm) GAP
__Ecoli_panGEMs__ALPATG160pp Apolipoprotein N-acyltransferase (phosphatidylglycerol, periplasm) GAP
HPYRI hydroxypyruvate isomerase GAP
H2tpp hydrogen transport diffusion (periplasm) GAP
GLYCK glycerate kinase GAP
ACONIs aconitate isomerase (spontaneous) GAP
5DGLCNt2rpp 5-Dehydro-D-gluconate transport via proton symport, reversible (periplasm) GAP
FRULYSE fructoselysine 3-epimerase GAP
FRULYSt2pp Fructoselysine transport via proton symport (periplasm) GAP
PSCLYSt2pp psicoselysine transport via proton symport (periplasm) GAP
MTHTHFSs (2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran synthesis (spontaneous) GAP
RFAMPtex Rifampin transport via diffusion (extracellular to periplasm) GAP
MEOHtrpp Methanol reversible transport via diffusion (periplasm) GAP
ETOHtrpp ethanol reversible transport via diffusion (periplasm) GAP
REPHACCOAI ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming) GAP
CBMD carbamate deaminase GAP
OXCOAHDH oxepin-CoA hydrolase/ 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase (NADP+) GAP
DHACOAH 2,3-dehydroadipyl-CoA hydratase GAP
ALDD19xr aldehyde dehydrogenase (phenylacetaldehyde, NAD) GAP
3OXCOAT 3-oxoadipyl-CoA thiolase GAP
DXYLTD D-xylonate dehydratase GAP
2DDARAA 2-dehydro-3-deoxy-D-arabinonate Aldolase GAP
ALLTAMH2 Allantoate amidinohydrolase GAP
UGCIAMH ureidoglycine aminohydrolase GAP
DMSOtpp Dimethyl sulfoxide transport via diffusion (periplasm) GAP
23DOGULNt4pp Na+/ 2,3-Dioxo-L-gulonate symport (periplasm) GAP
__Ecoli_panGEMs__FE3DCITexs Dicitrate Fe(III) binding (spontaneous) GAP
CHLt3pp choline transport via proton antiport (periplasm) GAP
GLYBt3pp Glycine betaine transport via proton antiport (periplasm) GAP
SQVOSI sulfoquinovose isomerase GAP
DHPStr 2,3-dihydroxypropane 1-sulfonate transporter GAP
PACOAT phenylacetyl-CoA thioesterase GAP
HPACOAT hydroxyphenylacetyl-CoA thioesterase GAP
__Ecoli_panGEMs__PUACGAMtr Transport of poly-?-1,6-N-acetyl-D-glucosamine (poly-?-1,6-N-acetyl-D-glucosamine synthase) GAP
5DGLCNR 5-dehydro-D-gluconate reductase GAP
__Ecoli_panGEMs__FESD1s Iron-sulfur cluster damage (peroxide, spontaneous) GAP
__Ecoli_panGEMs__PUACGAMS Poly-?-1,6-N-acetyl-D-glucosamine synthase GAP
DHGLYH Dehydroglycine Hydratase GAP
SQGH sulfoquinovosidase GAP
LCARSyi lacaldehyde reductase (S-propane-1,2-diol forming) GAP
MEPNabcpp methylpshophonic acid abc transporter GAP
NOVBCNtex Novobiocin transport via diffusion (extracellular to periplasm) GAP
__Ecoli_panGEMs__2HPTCOAT 2-hydroxycyclohepta-1,4,6-triene-1-carboxyl-CoA thioesterase GAP
DHPTDCs2 4,5-dihydroxy-2,3-pentanedione cyclization (spontaneous) GAP
PACCOAE ring 1,2-phenylacetyl-CoA epoxidase (NADPH) GAP
OXDHCOAT 3-oxo-5,6-dehydrosuberyl-CoA thiolase GAP
HADPCOADH3 3-hydroxyadipyl-CoA dehydrogenase (NAD+) GAP
__Ecoli_panGEMs__FESD2s Iron-sulfur cluster damage (nitrous oxide, spontaneous) GAP