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Gene
GAP
Associated reactions
  BiGG ID Name Gene reaction rule
GLYCTO2 Glycolate oxidase GAP
GLYCTO3 Glycolate oxidase GAP
GLYCTO4 Glycolate oxidase GAP
PUNP7 purine-nucleoside phosphorylase (Xanthosine) GAP
RMI L-rhamnose isomerase GAP
MNNH D-mannonate hydrolyase GAP
HCYSMT homocysteine S-methyltransferase GAP
LACZ b-galactosidase GAP
CINNDO Cinnamate dioxygenase GAP
DHPPD 2,3-dihydroxyphenylpropionate dehydrogenase GAP
DHCIND 2,3-dihydroxycinnamate dehydrogenase GAP
BUTCT Acetyl-CoA:butyrate-CoA transferase GAP
UDPGALM UDPgalactopyranose mutase GAP
TDPDRE dTDP-4-dehydrorhamnose 3,5-epimerase GAP
TDPDRR dTDP-4-dehydrorhamnose reductase GAP
DDPGALA 2-dehydro-3-deoxy-6-phosphogalactonate aldolase GAP
ALLTN allantoinase GAP
CRNBTCT gamma-butyrobetainyl-CoA: carnitine CoA transferase GAP
CRNCBCT crotonobetainyl-CoA: carnitine CoA transferase GAP
CRNCDH Carnityl-CoA dehydratse GAP
IDOND L-idonate 5-dehydrogenase GAP
IDOND2 L-indonate 5-dehydrogenase (NADP) GAP
CYNTAH Cyanate aminohydrolase GAP
GUAD_1 guanine deaminase GAP
BETALDHx betaine-aldehyde dehydrogenase GAP
BETALDHy betaine-aldehyde dehydrogenase GAP
FCI L-fucose isomerase GAP
OP4ENH 2-oxopent-4-enoate hydratase GAP
HOPNTAL 4-hydroxy-2-oxopentanoate aldolase GAP
3HPPPNH 3-(3-hydroxy-phenyl)propionate hydroxylase GAP
CSND Cytosine deaminase GAP
HPPPNDO 2,3-dihydroxypheylpropionate 1,2-dioxygenase GAP
MCITL2 methylisocitrate lyase GAP
DHCINDO 2,3-dihydroxycinnamate 1,2-dioxygenase GAP
HKNDDH 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase GAP
HKNTDH_1 2-hydroxy-6-ketononotrienedioate hydrolase GAP
URDGLYCD ureidoglycolate dehydrogenase GAP
MCITS 2-methylcitrate synthase GAP
PPPNDO Phenylpropanoate Dioxygenase GAP
DDGALK 2-dehydro-3-deoxygalactonokinase GAP
3HCINNMH 3-hydroxycinnamate hydroxylase GAP
PACCOAL phenylacetate-CoA ligase GAP
THMDt2pp thymidine transport in via proton symport (periplasm) GAP
URIt2pp uridine transport in via proton symport (periplasm) GAP
XTSNt2rpp Xanthosine transport via proton symport (periplasm) GAP
XYLUt2pp L-xylulose transport in via proton symport (periplasm) GAP
ACACt2pp acetoacetate transport via proton symport (periplasm) GAP
CHOLD choline dehydrogenase GAP
ADNt2pp adenosine transport in via proton symport (periplasm) GAP
ALLabcpp D-allose transport via ABC system (periplasm) GAP
ALLTNt2rpp allantoin transport in via proton symport (periplasm) GAP
__Ecoli_panGEMs__FE3DCITabcpp Iron transport from ferric-dicitrate via ABC system (periplasm) GAP
MALTtexi maltoseMaltotriose transport via diffusion (extracellular to periplasm) irreversible GAP
CRNt7pp Carnitine/butyrobetaine antiporter (periplasm) GAP
GLCtex glucose transport via diffusion (extracellular to periplasm) GAP
__Ecoli_panGEMs__FE3DCITtonex Ferric-dicitrate transport via ton system (extracellular) GAP
FUCtpp L-fucose transport via proton symport (periplasm) GAP
CSNt2pp cytosine transport in via proton symport (periplasm) GAP
CYNTt2pp Cyanate transport via proton symport (periplasm) GAP
CYTDt2pp cytidine transport in via proton symport (periplasm) GAP
__Ecoli_panGEMs__MALTTRtexi Maltotriose transport via diffusion (extracellular to periplasm) irreversible GAP
__Ecoli_panGEMs__MALTTTRtexi MaltotetraoseMaltotriose transport via diffusion (extracellular to periplasm) irreversible GAP
__Ecoli_panGEMs__MALTPTtexi MaltopentaoseMaltotriose transport via diffusion (extracellular to periplasm) irreversible GAP
__Ecoli_panGEMs__O16GLCT1 Glucosyltransferase I (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AP2pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP3pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16A4Lpp O16 anitgen (x4) ligase (periplasm) GAP
LYXI Lyxose isomerase GAP
BUTt2rpp Butyrate transport via proton symport, reversible (periplasm) GAP
CADVtpp Lysine/Cadaverine antiporter (periplasm) GAP
__Ecoli_panGEMs__ECA4OALpp Enterobacterial common antigen (x4) O-antigen ligase (periplasm) GAP
__Ecoli_panGEMs__GLCTR3 Glucosyltransferase III (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPT4 Heptosyltransferase IV (LPS core synthesis) GAP
CRNt8pp L-carnitine/D-carnitine antiporter (periplasm) GAP
CRNt2rpp L-carnitine outward transport (H+ antiport) GAP
CRNDt2rpp D-carnitine outward transport (H+ antiport) GAP
CTBTt2rpp cronobetaine outward transport (H+ antiport) GAP
42A12BOOXpp 4-(2-Aminoethyl)-1,2-benzenediol:oxygen oxidoreductase(deaminating)(flavin-containing) GAP
TYROXDApp Tyramine:oxygen oxidoreductase(deaminating)(flavin-containing) (periplasm) GAP
INOSTt4pp Na+/myo-inositol symporter (periplasm) GAP
ACANTHAT acetyl-CoA:anthranilate acetyltransferase GAP
__Ecoli_panGEMs__DAPAL 2,3-diaminopropionate amonnia lyase GAP
ARABDI L-fucose isomerase GAP
AGt3 silver transport out via proton antiport GAP
SKMt2pp shikimate transport in via proton symport (periplasm) GAP
R15BPK ribose-1,5-bisphosphokinase GAP
MALTabcpp maltose transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__MALTHXabcpp Maltohexaose transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__MALTPTabcpp Maltopentaose transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__MALTTRabcpp Maltotriose transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__MALTTTRabcpp Maltotetraose transport via ABC system (periplasm) GAP
MELIBt2pp melibiose transport in via symport (periplasm) GAP
3KGK 3-keto-L-gulonate kinase GAP
IDONt2rpp L-idonate transport via proton symport, reversible (periplasm) GAP
__Ecoli_panGEMs__FECRMtonex Ferrichrome transport via ton system (extracellular) GAP
PEAMNOpp Phenethylamine oxidase GAP
GAL1PPpp D-galactose 1-phosphatase GAP
ALLPI Allose 6-phosphate isomerase GAP
ALLK Allose kinase GAP
ALLULPE Allulose 6-phosphate epimerase GAP
FRUURt2rpp D-fructuronate transport via proton symport, reversible (periplasm) GAP
__Ecoli_panGEMs__O16AT Rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate O-acetyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16GALFT Galactofuranosyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AUNDtpp O16 antigen (flippase, cytoplasm to periplasm) GAP
__Ecoli_panGEMs__O16AP1pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__FE3HOXtonex Fe(III)hydroxamine transport via ton system (extracellular) GAP
HCYSMT2 Homocysteine Methyltransferase GAP
MMETt2pp S-methylmethionine permease (periplasm) GAP
HCINNMt2rpp 3-hydroxycinnamic acid transport via proton symport, reversible (periplasm) GAP
__Ecoli_panGEMs__14GLUCANabcpp 1,4-alpha-D-glucan transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__14GLUCANtexi 1,4-alpha-D-glucan transport via diffusion (extracellular to periplasm) irreversible GAP
PPDOy Propane-1,2-diol:NADP+ 1-oxidoreductase GAP
FHL Formate-hydrogen lyase GAP
GALTptspp Galactitol transport via PEP:Pyr PTS (periplasm) GAP
PTRCORNt7pp putrescine/ornithine antiporter (periplasm) GAP
CRNCAR carnitine-CoA racemase GAP
HPPPNt2rpp 3-(3-hydroxyphenyl)propionate transport via proton symport, reversible (periplasm) GAP
XAND xanthine dehydrogenase GAP
ABUTD Aminobutyraldehyde dehydrogenase GAP
GALCTD galactarate dehydratase GAP
UDPKAAT UDP-4''-ketopentose:UDP-4-amino-4-deoxy-L-arabinose aminotransferase GAP
__Ecoli_panGEMs__UPLA4FNT Undecaprenyl phosphate-L-Ara4FN transferase GAP
__Ecoli_panGEMs__ULA4Ntppi Transport (cytoplasm to periplasm) GAP
MCITD 2-methylcitrate dehydratase GAP
HXAND hypoxanthine dehydrogenase GAP
__Ecoli_panGEMs__MOAT3C 3-deoxy-D-manno-octulosonic acid transferase III (LPS core biosynthesis) GAP
CUt3 copper transport out via proton antiport GAP
__Ecoli_panGEMs__RHAT1 Rhamnosyltransferase I (LPS core biosynthesis) GAP
__Ecoli_panGEMs__GALT1 Galactosyltransferase I (LPS core synthesis) GAP
__Ecoli_panGEMs__GLCTR2 Glucosyltransferase II (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPK2 LPS heptose kinase II (LPS core synthesis) GAP
HXCT Acetyl-CoA:hexanoate-CoA transferase GAP
GALCTND galactonate dehydratase GAP
HEXt2rpp hexanoate transport via proton symport, reversible (periplasm) GAP
__Ecoli_panGEMs__MALTHXtexi Maltohexaose transport via diffusion (extracellular to periplasm) irreversible GAP
__Ecoli_panGEMs__FEOXAMtonex Ferroxamine transport via ton system (extracellular) GAP
GLYCK glycerate kinase GAP
5DGLCNt2rpp 5-Dehydro-D-gluconate transport via proton symport, reversible (periplasm) GAP
GALCTNt2pp D-galactonate transport via proton symport (periplasm) GAP
CTBTCAL2 Crotonobetaine-CoA Ligase GAP
CRNDCAL2 D-Carnitine-CoA Ligase GAP
CRNCAL2 Carnitine-CoA Ligase GAP
3AMACHYD 3-aminoacrylate hydrolase GAP
REPHACCOAI ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming) GAP
OXCOAHDH oxepin-CoA hydrolase/ 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase (NADP+) GAP
DHACOAH 2,3-dehydroadipyl-CoA hydratase GAP
ALDD19xr aldehyde dehydrogenase (phenylacetaldehyde, NAD) GAP
3OXCOAT 3-oxoadipyl-CoA thiolase GAP
URACPAH peroxyureidoacrylate hydrolase GAP
DXYLTD D-xylonate dehydratase GAP
2DDARAA 2-dehydro-3-deoxy-D-arabinonate Aldolase GAP
ALLTAMH2 Allantoate amidinohydrolase GAP
UGCIAMH ureidoglycine aminohydrolase GAP
POAACR peroxyaminoacrylate reductase GAP
23DOGULNt4pp Na+/ 2,3-Dioxo-L-gulonate symport (periplasm) GAP
ALR2x aldose reductase (methylglyoxal) (nadh) GAP
CHLt3pp choline transport via proton antiport (periplasm) GAP
TARTt2_3pp D-tartrate transport via proton symport (3 H) (periplasm) GAP
SUCTARTtpp succinate:D-tartrate antiporter (periplasm) GAP
GLYBt3pp Glycine betaine transport via proton antiport (periplasm) GAP
SQVOSI sulfoquinovose isomerase GAP
6D6SPA 6-deoxy-6-sulfofructose-1-phosphate aldolase GAP
__Ecoli_panGEMs__GHBDHx Gamma-hydroxybutyrate dehydrogenase (NADH) GAP
DHPStr 2,3-dihydroxypropane 1-sulfonate transporter GAP
SQtr sulfoquinovose transporter GAP
DHPStex 2,3-dihydroxypropane 1-sulfonate transport via diffusion GAP
AI2K autoinducer-2 kinase GAP
PHDA phenylhydantoinase GAP
PACOAT phenylacetyl-CoA thioesterase GAP
HPACOAT hydroxyphenylacetyl-CoA thioesterase GAP
__Ecoli_panGEMs__PUACGAMtr Transport of poly-?-1,6-N-acetyl-D-glucosamine (poly-?-1,6-N-acetyl-D-glucosamine synthase) GAP
DC6PDA chito-oligosaccharide mono-deacetylase GAP
5DGLCNR 5-dehydro-D-gluconate reductase GAP
AI2abcpp autoinducer-2 ABC transporter GAP
__Ecoli_panGEMs__PAI2I Phospho-AI-2 isomerase GAP
LCTStpp Lactose transport via proton symport (periplasm) GAP
__Ecoli_panGEMs__PUACGAMS Poly-?-1,6-N-acetyl-D-glucosamine synthase GAP
3SLAR 3-sulfolactaldehyde reductase GAP
SQtex sulphoquinovose transport via diffusion GAP
CPL carbon-phosphorous lyase GAP
INOSTO myo-Inositol:oxygen oxidoreductase GAP
__Ecoli_panGEMs__PAI2T 3-hydroxy-2,4-pentadione 5-phosphate thiolase GAP
SERtpp L-serine export via facilitated transport GAP
RHMND L-rhamnonate dehydratase GAP
AMPNTAT aminoalkylphosphonate N-acetyltransferase GAP
URATEtpp uric acid transporter GAP
SQGH sulfoquinovosidase GAP
ARMEPNS ?-D-ribose 1-methylphosphonate 5-triphosphate synthase GAP
LCARSyi lacaldehyde reductase (S-propane-1,2-diol forming) GAP
__Ecoli_panGEMs__MOCDS Molybdopterin cytidine dinucleotide synthase GAP
RPNTPH RPnTP hydrolase GAP
PRCPD 5-phospho-?-D-ribosyl 1,2-cyclic phosphate phosphodiesterase GAP
MEPNabcpp methylpshophonic acid abc transporter GAP
__Ecoli_panGEMs__2HPTCOAT 2-hydroxycyclohepta-1,4,6-triene-1-carboxyl-CoA thioesterase GAP
MC6PH monoacetylchitobiose-6-phosphate hydrolase GAP
PACCOAE ring 1,2-phenylacetyl-CoA epoxidase (NADPH) GAP
OXDHCOAT 3-oxo-5,6-dehydrosuberyl-CoA thiolase GAP
HADPCOADH3 3-hydroxyadipyl-CoA dehydrogenase (NAD+) GAP
PYROX pyrimidine oxygenase GAP