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Gene
GAP
Associated reactions
  BiGG ID Name Gene reaction rule
CYTDK2_1 cytidine kinase (GTP) GAP
XPPT xanthine phosphoribosyltransferase GAP
G5SD glutamate-5-semialdehyde dehydrogenase GAP
PGK phosphoglycerate kinase GAP
URIK1_1 uridine kinase (ATP:Uridine) GAP
URIK2 uridine kinase (GTP:Uridine) GAP
PGL 6-phosphogluconolactonase GAP
CYTDK1 cytidine kinase (ATP) GAP
PUNP7 purine-nucleoside phosphorylase (Xanthosine) GAP
AGMT agmatinase GAP
PMANM phosphomannomutase GAP
GLYCL Glycine Cleavage System GAP
HCYSMT homocysteine S-methyltransferase GAP
LACZ b-galactosidase GAP
GOFUCR GDP-4-oxo-L-fucose reductase GAP
__Ecoli_panGEMs__AACPS1 Acyl-[acyl-carrier-protein] synthetase (n-C14:0) GAP
UDPGALM UDPgalactopyranose mutase GAP
TDPDRE dTDP-4-dehydrorhamnose 3,5-epimerase GAP
TDPDRR dTDP-4-dehydrorhamnose reductase GAP
ALLTN allantoinase GAP
S7PI sedoheptulose 7-phosphate isomerase GAP
__Ecoli_panGEMs__MCOATA Malonyl-CoA-ACP transacylase GAP
CYNTAH Cyanate aminohydrolase GAP
GUAD_1 guanine deaminase GAP
BETALDHx betaine-aldehyde dehydrogenase GAP
BETALDHy betaine-aldehyde dehydrogenase GAP
__Ecoli_panGEMs__AACPS2 Acyl-[acyl-carrier-protein] synthetase (n-C14:1) GAP
AMPN AMP nucleosidase GAP
__Ecoli_panGEMs__AACPS3 Acyl-[acyl-carrier-protein] synthetase (n-C16:0) GAP
__Ecoli_panGEMs__AACPS4 Acyl-[acyl-carrier-protein] synthetase (n-C16:1) GAP
OP4ENH 2-oxopent-4-enoate hydratase GAP
HOPNTAL 4-hydroxy-2-oxopentanoate aldolase GAP
3HPPPNH 3-(3-hydroxy-phenyl)propionate hydroxylase GAP
__Ecoli_panGEMs__GMAND GDP-D-mannose dehydratase GAP
PPCSCT Propanoyl-CoA: succinate CoA-transferase GAP
DCTPD dCTP deaminase GAP
__Ecoli_panGEMs__UAGAAT UDP-N-acetylglucosamine acyltransferase GAP
ATPPRT ATP phosphoribosyltransferase GAP
HISTD histidinol dehydrogenase GAP
CSND Cytosine deaminase GAP
IGPDH imidazoleglycerol-phosphate dehydratase GAP
PRATPP phosphoribosyl-ATP pyrophosphatase GAP
PRMICI 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase GAP
METAT methionine adenosyltransferase GAP
ACBIPGT Adenosyl cobinamide phosphate guanyltransferase GAP
PRAMPC_1 phosphoribosyl-AMP cyclohydrolase GAP
ADOCBLS Adenosylcobalamin 5'-phosphate synthase GAP
ADOCBIK Adenosyl cobinamide kinase GAP
HPPPNDO 2,3-dihydroxypheylpropionate 1,2-dioxygenase GAP
MCITL2 methylisocitrate lyase GAP
DHCINDO 2,3-dihydroxycinnamate 1,2-dioxygenase GAP
HKNDDH 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase GAP
HKNTDH_1 2-hydroxy-6-ketononotrienedioate hydrolase GAP
URDGLYCD ureidoglycolate dehydrogenase GAP
ETHAAL Ethanolamine ammonia-lyase GAP
MAN1PT2 mannose-1-phosphate guanylyltransferase (GDP) GAP
MCITS 2-methylcitrate synthase GAP
GND phosphogluconate dehydrogenase GAP
GLU5K glutamate 5-kinase GAP
__Ecoli_panGEMs__ACOATA Acetyl-CoA ACP transacylase GAP
UDPGD UDPglucose 6-dehydrogenase GAP
FBA3 Sedoheptulose 1,7-bisphosphate D-glyceraldehyde-3-phosphate-lyase GAP
LCADi lactaldehyde dehydrogenase GAP
AHGDx (S)-alpha-hydroxyglutarate dehydrogenase GAP
3HCINNMH 3-hydroxycinnamate hydroxylase GAP
PACCOAL phenylacetate-CoA ligase GAP
THMDt2pp thymidine transport in via proton symport (periplasm) GAP
URIt2pp uridine transport in via proton symport (periplasm) GAP
XTSNt2rpp Xanthosine transport via proton symport (periplasm) GAP
XYLUt2pp L-xylulose transport in via proton symport (periplasm) GAP
CHOLD choline dehydrogenase GAP
ADNt2pp adenosine transport in via proton symport (periplasm) GAP
ALLabcpp D-allose transport via ABC system (periplasm) GAP
ALLTNt2rpp allantoin transport in via proton symport (periplasm) GAP
__Ecoli_panGEMs__FE3DCITabcpp Iron transport from ferric-dicitrate via ABC system (periplasm) GAP
__Ecoli_panGEMs__FE3DCITtonex Ferric-dicitrate transport via ton system (extracellular) GAP
FUCtpp L-fucose transport via proton symport (periplasm) GAP
GALt2pp D-galactose transport in via proton symport (periplasm) GAP
CSNt2pp cytosine transport in via proton symport (periplasm) GAP
CYNTt2pp Cyanate transport via proton symport (periplasm) GAP
CYTDt2pp cytidine transport in via proton symport (periplasm) GAP
__Ecoli_panGEMs__O16GLCT1 Glucosyltransferase I (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AP2pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP3pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16A4Lpp O16 anitgen (x4) ligase (periplasm) GAP
CADVtpp Lysine/Cadaverine antiporter (periplasm) GAP
__Ecoli_panGEMs__LADGMDH L-alanyl-gamma-D-glutamyl-meso-diaminopimelate hydrolase GAP
ALAGLUE L-alanyl-gamma-glutamate epimerase GAP
__Ecoli_panGEMs__ECA4OALpp Enterobacterial common antigen (x4) O-antigen ligase (periplasm) GAP
__Ecoli_panGEMs__GLCTR3 Glucosyltransferase III (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPT4 Heptosyltransferase IV (LPS core synthesis) GAP
42A12BOOXpp 4-(2-Aminoethyl)-1,2-benzenediol:oxygen oxidoreductase(deaminating)(flavin-containing) GAP
TYROXDApp Tyramine:oxygen oxidoreductase(deaminating)(flavin-containing) (periplasm) GAP
__Ecoli_panGEMs__DAPAL 2,3-diaminopropionate amonnia lyase GAP
LALGP L-alanyl-gamma-L-glutamate peptidase GAP
SKMt2pp shikimate transport in via proton symport (periplasm) GAP
3KGK 3-keto-L-gulonate kinase GAP
GDPMNH GDP-mannose mannosyl hydrolase GAP
PEAMNOpp Phenethylamine oxidase GAP
GAL1PPpp D-galactose 1-phosphatase GAP
NTPP9_1 Nucleoside triphosphate pyrophosphorylase (itp) GAP
NTPP10 Nucleoside triphosphate pyrophosphorylase (ditp) GAP
NTPP11_1 Nucleoside triphosphate pyrophosphorylase (xtp) GAP
ARGDCpp arginine decarboxylase GAP
ALLK Allose kinase GAP
ALLULPE Allulose 6-phosphate epimerase GAP
__Ecoli_panGEMs__O16AT Rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate O-acetyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16GALFT Galactofuranosyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AUNDtpp O16 antigen (flippase, cytoplasm to periplasm) GAP
__Ecoli_panGEMs__O16AP1pp O16 antigen polymerase (periplasm) GAP
HCYSMT2 Homocysteine Methyltransferase GAP
FALDH2 formaldehyde dehydrogenase GAP
MMETt2pp S-methylmethionine permease (periplasm) GAP
HCINNMt2rpp 3-hydroxycinnamic acid transport via proton symport, reversible (periplasm) GAP
PPDOy Propane-1,2-diol:NADP+ 1-oxidoreductase GAP
GALTptspp Galactitol transport via PEP:Pyr PTS (periplasm) GAP
GLCt2pp D-glucose transport in via proton symport (periplasm) GAP
HSTPT histidinol-phosphate transaminase GAP
HPPPNt2rpp 3-(3-hydroxyphenyl)propionate transport via proton symport, reversible (periplasm) GAP
XAND xanthine dehydrogenase GAP
NNDMBRT Nicotinate-nucleotide dimethylbenzimidazole phosphoribosyltransferase GAP
IG3PS Imidazole-glycerol-3-phosphate synthase GAP
__Ecoli_panGEMs__AACPS5 Acyl-[acyl-carrier-protein] synthetase (n-C18:1) GAP
MMCD Methylmalonyl-CoA decarboxylase GAP
GTHS glutathione synthetase GAP
MCITD 2-methylcitrate dehydratase GAP
HXAND hypoxanthine dehydrogenase GAP
__Ecoli_panGEMs__MOAT3C 3-deoxy-D-manno-octulosonic acid transferase III (LPS core biosynthesis) GAP
__Ecoli_panGEMs__RHAT1 Rhamnosyltransferase I (LPS core biosynthesis) GAP
__Ecoli_panGEMs__GALT1 Galactosyltransferase I (LPS core synthesis) GAP
__Ecoli_panGEMs__GLCTR2 Glucosyltransferase II (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPK2 LPS heptose kinase II (LPS core synthesis) GAP
__Ecoli_panGEMs__GDMANE GDP-4-dehydro-6-deoxy-D-mannose epimerase GAP
__Ecoli_panGEMs__AACPS8 Acyl-[acyl-carrier-protein] synthetase (n-C10:0) GAP
__Ecoli_panGEMs__AACPS9 Acyl-[acyl-carrier-protein] synthetase (n-C8:0) GAP
__Ecoli_panGEMs__AACPS6 Acyl-[acyl-carrier-protein] synthetase (n-C18:0) GAP
__Ecoli_panGEMs__AACPS7 Acyl-[acyl-carrier-protein] synthetase (n-C12:0) GAP
GCALDD Glycolaldehyde dehydrogenase GAP
HISTP_1 histidinol-phosphatase GAP
LDH_D D-lactate dehydrogenase GAP
IPDDI isopentenyl-diphosphate D-isomerase GAP
PGCD phosphoglycerate dehydrogenase GAP
GLYCK glycerate kinase GAP
__Ecoli_panGEMs__G3PAT141 Glycerol-3-phosphate acyltransferase (C14:1) GAP
__Ecoli_panGEMs__G3PAT181 Glycerol-3-phosphate acyltransferase (C18:1) GAP
__Ecoli_panGEMs__DSBCGT DsbC:glutathione thiotransferase GAP
__Ecoli_panGEMs__G3PAT140 Glycerol-3-phosphate acyltransferase (C14:0) GAP
__Ecoli_panGEMs__G3PAT160 Glycerol-3-phosphate acyltransferase (C16:0) GAP
__Ecoli_panGEMs__G3PAT161 Glycerol-3-phosphate acyltransferase (C16:1) GAP
__Ecoli_panGEMs__G3PAT180 Glycerol-3-phosphate acyltransferase (C18:0) GAP
__Ecoli_panGEMs__TDSR1 Thiol:disulfide reductase (DsbC) GAP
__Ecoli_panGEMs__G3PAT120 Glycerol-3-phosphate acyltransferase (C12:0) GAP
__Ecoli_panGEMs__ACOAD7f Acyl-CoA dehydrogenase (hexadecanoyl-CoA) GAP
__Ecoli_panGEMs__ACOAD8f Acyl-CoA dehydrogenase (octadecanoyl-CoA) GAP
__Ecoli_panGEMs__ACOAD5f Acyl-CoA dehydrogenase (dodecanoyl-CoA) GAP
__Ecoli_panGEMs__ACOAD3f Acyl-CoA dehydrogenase (octanoyl-CoA) GAP
__Ecoli_panGEMs__ACOAD2f Acyl-CoA dehydrogenase (hexanoyl-CoA) GAP
__Ecoli_panGEMs__ACOAD4f Acyl-CoA dehydrogenase (decanoyl-CoA) GAP
__Ecoli_panGEMs__ACOAD6f Acyl-CoA dehydrogenase (tetradecanoyl-CoA) GAP
ARGt3pp L-arginine transport out via proton antiport (cytoplasm to periplasm) GAP
__Ecoli_panGEMs__POR5 Pyruvate synthase GAP
__Ecoli_panGEMs__ACPPAT140 Acyl-(acyl carrier protein):phosphate acyltransferase (C14:0) GAP
REPHACCOAI ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming) GAP
__Ecoli_panGEMs__ACPPAT141 Acyl-(acyl carrier protein):phosphate acyltransferase (C14:1) GAP
__Ecoli_panGEMs__ACPPAT161 Acyl-(acyl carrier protein):phosphate acyltransferase (C16:1) GAP
__Ecoli_panGEMs__ACPPAT180 Acyl-(acyl carrier protein):phosphate acyltransferase (C18:0) GAP
OXCOAHDH oxepin-CoA hydrolase/ 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase (NADP+) GAP
DHACOAH 2,3-dehydroadipyl-CoA hydratase GAP
THFAT Aminomethyltransferase GAP
__Ecoli_panGEMs__ACPPAT120 Acyl-(acyl carrier protein):phosphate acyltransferase (C12:0) GAP
ALDD19xr aldehyde dehydrogenase (phenylacetaldehyde, NAD) GAP
MMM Methylmalonyl-CoA mutase GAP
3OXCOAT 3-oxoadipyl-CoA thiolase GAP
DXYLTD D-xylonate dehydratase GAP
2DDARAA 2-dehydro-3-deoxy-D-arabinonate Aldolase GAP
AP4AS Ap4A synthetase GAP
ALLTAMH2 Allantoate amidinohydrolase GAP
UGCIAMH ureidoglycine aminohydrolase GAP
23DOGULNt4pp Na+/ 2,3-Dioxo-L-gulonate symport (periplasm) GAP
__Ecoli_panGEMs__ACPPAT160 Acyl-(acyl carrier protein):phosphate acyltransferase (C16:0) GAP
ALR2x aldose reductase (methylglyoxal) (nadh) GAP
OMPHHXy 2-octaprenyl-6-methoxyphenol hydroxylase (NADPH) GAP
__Ecoli_panGEMs__ACPPAT181 Acyl-(acyl carrier protein):phosphate acyltransferase (C18:1) GAP
DHPStr 2,3-dihydroxypropane 1-sulfonate transporter GAP
SQtr sulfoquinovose transporter GAP
DHPStex 2,3-dihydroxypropane 1-sulfonate transport via diffusion GAP
AI2K autoinducer-2 kinase GAP
4ABZGLUH p-aminobenzoyl-glutamate hydrolase GAP
4ABZGLUtr p-aminobenzoyl glutamate:H+ symporter GAP
PHDA phenylhydantoinase GAP
TEO2M tellurite methyltransferase GAP
PACOAT phenylacetyl-CoA thioesterase GAP
__Ecoli_panGEMs__FADt FAD transporter, periplasm GAP
HPACOAT hydroxyphenylacetyl-CoA thioesterase GAP
__Ecoli_panGEMs__PUACGAMtr Transport of poly-?-1,6-N-acetyl-D-glucosamine (poly-?-1,6-N-acetyl-D-glucosamine synthase) GAP
AI2abcpp autoinducer-2 ABC transporter GAP
LCTStpp Lactose transport via proton symport (periplasm) GAP
__Ecoli_panGEMs__PUACGAMS Poly-?-1,6-N-acetyl-D-glucosamine synthase GAP
SQtex sulphoquinovose transport via diffusion GAP
ARHGDx (R)-alpha-hydroxyglutarate dehydrogenase GAP
__Ecoli_panGEMs__FMNt FMN transporter, periplasm GAP
__Ecoli_panGEMs__PAI2T 3-hydroxy-2,4-pentadione 5-phosphate thiolase GAP
SERtpp L-serine export via facilitated transport GAP
__Ecoli_panGEMs__ACOAD1fr Acyl-CoA dehydrogenase (butanoyl-CoA) GAP
URATEtpp uric acid transporter GAP
SQGH sulfoquinovosidase GAP
LCARSyi lacaldehyde reductase (S-propane-1,2-diol forming) GAP
__Ecoli_panGEMs__MOCDS Molybdopterin cytidine dinucleotide synthase GAP
UDPGPT undecaprenyl-phosphate glucose phosphotransferase GAP
MEPNabcpp methylpshophonic acid abc transporter GAP
OPHHXy 2-Octaprenylphenol hydroxylase (NADPH) GAP
__Ecoli_panGEMs__2HPTCOAT 2-hydroxycyclohepta-1,4,6-triene-1-carboxyl-CoA thioesterase GAP
PACCOAE ring 1,2-phenylacetyl-CoA epoxidase (NADPH) GAP
OXDHCOAT 3-oxo-5,6-dehydrosuberyl-CoA thiolase GAP
HADPCOADH3 3-hydroxyadipyl-CoA dehydrogenase (NAD+) GAP