O2Stex in 622_421_json
- superoxide anion transport via diffusion (extracellular to periplasm)
- o2s_e:-1 ⇌ o2s_p:-1
- Bounds: (-1000.0, 1000.0)
- Universal Reaction: O2Stex
Properties
- Names: superoxide anion transport via diffusion (extracellular to periplasm)[0], superoxide anion transport via diffusion[0,1,2,3,4], TRANS-RXNBWI-115401.ce.maizeexp.SUPER-OXIDE_SUPER-OXIDE[1], TRANS-RXNBWI-115401.cm.maizeexp.SUPER-OXIDE_SUPER-OXIDE[2], -[3,4]
Reaction Participants
| Stoich. | BiGG ID | Name | Reference | x [side] | Compartment | |
|---|---|---|---|---|---|---|
 |
-1 | o2s_e:-1 | superoxide | CHEBI:18421 | - | - |
 |
1 | o2s_p:-1 | superoxide | CHEBI:18421 | - | - |
Gene Reaction Rule
GHHAMBDP_02436 or GHHAMBDP_01515 or GHHAMBDP_04066 or GHHAMBDP_03193
| BiGG ID | Name | |
|---|---|---|
 |
GHHAMBDP_04066 | None |
|
GHHAMBDP_02436 | None |
|
GHHAMBDP_03193 | None |
|
GHHAMBDP_01515 | None |
MEMOTE Flags
This reaction was flagged in the following MEMOTE tests:
There are a total of 5 reversible oxygen-containing reactions (9.80% of all oxygen-containing reactions): INOSTO, O2tex, O2tpp, EX_o2_e, O2Stex
The directionality of oxygen-producing/-consuming reactions affects the model's ability to grow anaerobically i.e. create faux-anaerobic organisms. This test reports how many of these oxygen-containing reactions are reversible. This test does not have any mandatory 'pass' criteria. Implementation: First, find the metabolite representing atmospheric oxygen in the model on the basis of an internal mapping table or by specifically looking for the formula "O2". Then, find all reactions that produce or consume oxygen and report those that are reversible.