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Gene
GAP
Associated reactions
  BiGG ID Name Gene reaction rule
ACS acetyl-CoA synthetase GAP
GLYCTO2 Glycolate oxidase GAP
GLYCTO3 Glycolate oxidase GAP
GLYCTO4 Glycolate oxidase GAP
GLXCL glyoxalate carboligase GAP
HCYSMT homocysteine S-methyltransferase GAP
LACZ b-galactosidase GAP
DHAPT Dihydroxyacetone phosphotransferase GAP
UDPGALM UDPgalactopyranose mutase GAP
TDPDRE dTDP-4-dehydrorhamnose 3,5-epimerase GAP
ALLTN allantoinase GAP
AOBUTDs L-2-amino-3-oxobutanoate decarboxylation (spontaneous) GAP
CYNTAH Cyanate aminohydrolase GAP
TRE6PP trehalose-phosphatase GAP
BETALDHx betaine-aldehyde dehydrogenase GAP
BETALDHy betaine-aldehyde dehydrogenase GAP
M1PD mannitol-1-phosphate 5-dehydrogenase GAP
ACCOAL acetate-CoA ligase (ADP-forming) GAP
UGLYCH Ureidoglycolate hydrolase GAP
OP4ENH 2-oxopent-4-enoate hydratase GAP
HOPNTAL 4-hydroxy-2-oxopentanoate aldolase GAP
3HPPPNH 3-(3-hydroxy-phenyl)propionate hydroxylase GAP
G5SADs L-glutamate 5-semialdehyde dehydratase (spontaneous) GAP
CSND Cytosine deaminase GAP
HPPPNDO 2,3-dihydroxypheylpropionate 1,2-dioxygenase GAP
MCITL2 methylisocitrate lyase GAP
DHCINDO 2,3-dihydroxycinnamate 1,2-dioxygenase GAP
HKNDDH 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase GAP
HKNTDH_1 2-hydroxy-6-ketononotrienedioate hydrolase GAP
MANPGH 2-O-alpha-mannosyl-6-phosphate-D-glycerate hydrolase GAP
URDGLYCD ureidoglycolate dehydrogenase GAP
MCITS 2-methylcitrate synthase GAP
LCADi lactaldehyde dehydrogenase GAP
3HCINNMH 3-hydroxycinnamate hydroxylase GAP
PACCOAL phenylacetate-CoA ligase GAP
XYLt2pp D-xylose transport in via proton symport (periplasm) GAP
O2tpp o2 transport via diffusion (periplasm) GAP
CHOLD choline dehydrogenase GAP
TRE6PS alpha,alpha-trehalose-phosphate synthase (UDP-forming) GAP
CO2tpp CO2 transporter via diffusion (periplasm) GAP
ALLabcpp D-allose transport via ABC system (periplasm) GAP
ALLTNt2rpp allantoin transport in via proton symport (periplasm) GAP
ASPt2pp L-aspartate transport in via proton symport (periplasm) GAP
__Ecoli_panGEMs__FE3DCITabcpp Iron transport from ferric-dicitrate via ABC system (periplasm) GAP
CHLabcpp choline transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__FE3DCITtonex Ferric-dicitrate transport via ton system (extracellular) GAP
CSNt2pp cytosine transport in via proton symport (periplasm) GAP
CYNTt2pp Cyanate transport via proton symport (periplasm) GAP
ACALDtpp acetaldehyde reversible transport (periplasm) GAP
__Ecoli_panGEMs__O16GLCT1 Glucosyltransferase I (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AP2pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP3pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16A4Lpp O16 anitgen (x4) ligase (periplasm) GAP
CADVtpp Lysine/Cadaverine antiporter (periplasm) GAP
FRULYSK Fructoselysine Kinase GAP
MCPST 3-mercaptopyruvate sulfurtransferase GAP
DATPHs dATP amine hydrolysis (spontaneous) GAP
__Ecoli_panGEMs__ECA4OALpp Enterobacterial common antigen (x4) O-antigen ligase (periplasm) GAP
__Ecoli_panGEMs__GLCTR3 Glucosyltransferase III (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPT4 Heptosyltransferase IV (LPS core synthesis) GAP
NOtpp NO transport (diffusion) GAP
N2Otpp nitrious oxide transport (diffusion) GAP
42A12BOOXpp 4-(2-Aminoethyl)-1,2-benzenediol:oxygen oxidoreductase(deaminating)(flavin-containing) GAP
TYROXDApp Tyramine:oxygen oxidoreductase(deaminating)(flavin-containing) (periplasm) GAP
__Ecoli_panGEMs__NTRIR4pp Nitrite Reductase (Menaquinole-8, periplasm) GAP
__Ecoli_panGEMs__NTRIR3pp Nitrite Reductase (Ubiquinole-8, periplasm) GAP
INOSTt4pp Na+/myo-inositol symporter (periplasm) GAP
ACANTHAT acetyl-CoA:anthranilate acetyltransferase GAP
FALDtpp formaldehyde transport via diffusion (periplasm) GAP
__Ecoli_panGEMs__FECRMexs Ferrichrome Fe(III)-loading reaction (spontaneous) GAP
__Ecoli_panGEMs__DAPAL 2,3-diaminopropionate amonnia lyase GAP
__Ecoli_panGEMs__ARBTNexs Aerobactin Fe-loading reaction (spontaneous) GAP
__Ecoli_panGEMs__FEOXAMexs Ferroxamine Fe3-loading reaction (spontaneous) GAP
__Ecoli_panGEMs__FEENTERexs Enterobactin Fe(III) binding (spontaneous) GAP
__Ecoli_panGEMs__FE3HOXexs Fe(III) hydroxamate Fe-loading reaction (spontaneaous) GAP
R15BPK ribose-1,5-bisphosphokinase GAP
MALTabcpp maltose transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__MALTHXabcpp Maltohexaose transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__MALTPTabcpp Maltopentaose transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__MALTTRabcpp Maltotriose transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__MALTTTRabcpp Maltotetraose transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__CPGNexs Coprogen Fe-loading reaction (spontaneaous) GAP
MANGLYCptspp 2-O-alpha-mannosyl-D-glycerate transport via PEP:Pyr PTS (periplasm) GAP
DDCAtexi Fatty acid (dodecanoate) transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
TTDCAtexi Tetradecanoate transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
HDCAtexi Hexadecanoate transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
ATPHs ATP amine hydrolysis (spontaneous) GAP
GTPHs GTP amine hydrolysis (spontaneous) GAP
FRULYSDG Fructoselysine phosphate deglycase GAP
IDONt2rpp L-idonate transport via proton symport, reversible (periplasm) GAP
OCDCAtexi Octadecanoate transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
OCDCEAtexi Octadecenoate (n-C18:1) transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
PEAMNOpp Phenethylamine oxidase GAP
ALLPI Allose 6-phosphate isomerase GAP
ALLK Allose kinase GAP
ALLULPE Allulose 6-phosphate epimerase GAP
METOX1s methionine oxidation (spontaneous) GAP
METOX2s methionine oxidation 2 (spontaneous) GAP
__Ecoli_panGEMs__O16AT Rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate O-acetyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16GALFT Galactofuranosyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AUNDtpp O16 antigen (flippase, cytoplasm to periplasm) GAP
__Ecoli_panGEMs__O16AP1pp O16 antigen polymerase (periplasm) GAP
HCYSMT2 Homocysteine Methyltransferase GAP
FALDH2 formaldehyde dehydrogenase GAP
MMETt2pp S-methylmethionine permease (periplasm) GAP
GLUt2rpp L-glutamate transport via proton symport, reversible (periplasm) GAP
HCINNMt2rpp 3-hydroxycinnamic acid transport via proton symport, reversible (periplasm) GAP
ARBt3ipp L-arabinose transport via proton antiport (periplasm) GAP
__Ecoli_panGEMs__14GLUCANabcpp 1,4-alpha-D-glucan transport via ABC system (periplasm) GAP
PPDOy Propane-1,2-diol:NADP+ 1-oxidoreductase GAP
FALGTHLs formaldehyde glutathione ligase (spontaneous) GAP
FHL Formate-hydrogen lyase GAP
GALTptspp Galactitol transport via PEP:Pyr PTS (periplasm) GAP
PTRCORNt7pp putrescine/ornithine antiporter (periplasm) GAP
HPPPNt2rpp 3-(3-hydroxyphenyl)propionate transport via proton symport, reversible (periplasm) GAP
XAND xanthine dehydrogenase GAP
OMCDC 2-Oxo-4-methyl-3-carboxypentanoate decarboxylation GAP
H2St1pp h2s transport (periplasm) GAP
MCITD 2-methylcitrate dehydratase GAP
HXAND hypoxanthine dehydrogenase GAP
__Ecoli_panGEMs__MOAT3C 3-deoxy-D-manno-octulosonic acid transferase III (LPS core biosynthesis) GAP
__Ecoli_panGEMs__RHAT1 Rhamnosyltransferase I (LPS core biosynthesis) GAP
__Ecoli_panGEMs__GALT1 Galactosyltransferase I (LPS core synthesis) GAP
__Ecoli_panGEMs__GLCTR2 Glucosyltransferase II (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPT3 Heptosyltransferase III (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPK2 LPS heptose kinase II (LPS core synthesis) GAP
SO2tpp SO2 transport via diffusion (periplasm) GAP
GCALDD Glycolaldehyde dehydrogenase GAP
TTDCEAtexi Tetradecenoate transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
HDCEAtexi Hexadecenoate transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
HPYRI hydroxypyruvate isomerase GAP
H2tpp hydrogen transport diffusion (periplasm) GAP
GLYCK glycerate kinase GAP
MELIBt3ipp melibiose transport in via antiport (periplasm) GAP
__Ecoli_panGEMs__LPLIPAL1G141pp Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C14:1) (periplasm) GAP
LPLIPAL1G180pp Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C18:0) (periplasm) GAP
__Ecoli_panGEMs__LPLIPAL1G181pp Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C18:1) (periplasm) GAP
ACONIs aconitate isomerase (spontaneous) GAP
__Ecoli_panGEMs__LPLIPAL1E141pp Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C14:1) (periplasm) GAP
LPLIPAL1E160pp Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C16:0) (periplasm) GAP
LPLIPAL1E180pp Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C18:0) (periplasm) GAP
__Ecoli_panGEMs__LPLIPAL1E181pp Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C18:1) (periplasm) GAP
LPLIPAL1G160pp Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C16:0) (periplasm) GAP
__Ecoli_panGEMs__LPLIPAL1G161pp Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C16:1) (periplasm) GAP
__Ecoli_panGEMs__LPLIPAL1G120pp Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C12:0) (periplasm) GAP
__Ecoli_panGEMs__LPLIPAL1A141pp Lysophospholipase L1 (2-acylglycerophosphotidate, n-C14:1) (periplasm) GAP
LPLIPAL1A180pp Lysophospholipase L1 (2-acylglycerophosphotidate, n-C18:0) (periplasm) GAP
LPLIPAL1E140pp Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C14:0) (periplasm) GAP
__Ecoli_panGEMs__LPLIPAL1E161pp Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C16:1) (periplasm) GAP
LPLIPAL1G140pp Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C14:0) (periplasm) GAP
LPLIPAL1A120pp Lysophospholipase L1 (2-acylglycerophosphotidate, n-C12:0) (periplasm) GAP
__Ecoli_panGEMs__LPLIPAL1A140pp Lysophospholipase L1 (2-acylglycerophosphotidate, n-C14:0) (periplasm) GAP
__Ecoli_panGEMs__LPLIPAL1A181pp Lysophospholipase L1 (2-acylglycerophosphotidate, n-C18:1) (periplasm) GAP
LPLIPAL1E120pp Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C12:0) (periplasm) GAP
5DGLCNt2rpp 5-Dehydro-D-gluconate transport via proton symport, reversible (periplasm) GAP
FRULYSE fructoselysine 3-epimerase GAP
FRULYSt2pp Fructoselysine transport via proton symport (periplasm) GAP
__Ecoli_panGEMs__LPLIPAL1A161pp Lysophospholipase L1 (2-acylglycerophosphotidate, n-C16:1) (periplasm) GAP
LPLIPAL1A160pp Lysophospholipase L1 (2-acylglycerophosphotidate, n-C16:0) (periplasm) GAP
PSCLYSt2pp psicoselysine transport via proton symport (periplasm) GAP
MTHTHFSs (2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran synthesis (spontaneous) GAP
RFAMPtex Rifampin transport via diffusion (extracellular to periplasm) GAP
MEOHtrpp Methanol reversible transport via diffusion (periplasm) GAP
SELR selenate reductase GAP
ETOHtrpp ethanol reversible transport via diffusion (periplasm) GAP
REPHACCOAI ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming) GAP
CBMD carbamate deaminase GAP
OXCOAHDH oxepin-CoA hydrolase/ 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase (NADP+) GAP
DHACOAH 2,3-dehydroadipyl-CoA hydratase GAP
ALDD19xr aldehyde dehydrogenase (phenylacetaldehyde, NAD) GAP
3OXCOAT 3-oxoadipyl-CoA thiolase GAP
DXYLTD D-xylonate dehydratase GAP
2DDARAA 2-dehydro-3-deoxy-D-arabinonate Aldolase GAP
ALLTAMH2 Allantoate amidinohydrolase GAP
UGCIAMH ureidoglycine aminohydrolase GAP
DMSOtpp Dimethyl sulfoxide transport via diffusion (periplasm) GAP
__Ecoli_panGEMs__FE3DCITexs Dicitrate Fe(III) binding (spontaneous) GAP
CHLt3pp choline transport via proton antiport (periplasm) GAP
GLYBt3pp Glycine betaine transport via proton antiport (periplasm) GAP
AI2K autoinducer-2 kinase GAP
PHDA phenylhydantoinase GAP
PACOAT phenylacetyl-CoA thioesterase GAP
HPACOAT hydroxyphenylacetyl-CoA thioesterase GAP
__Ecoli_panGEMs__PUACGAMtr Transport of poly-?-1,6-N-acetyl-D-glucosamine (poly-?-1,6-N-acetyl-D-glucosamine synthase) GAP
5DGLCNR 5-dehydro-D-gluconate reductase GAP
AI2abcpp autoinducer-2 ABC transporter GAP
LCTStpp Lactose transport via proton symport (periplasm) GAP
__Ecoli_panGEMs__FESD1s Iron-sulfur cluster damage (peroxide, spontaneous) GAP
__Ecoli_panGEMs__PUACGAMS Poly-?-1,6-N-acetyl-D-glucosamine synthase GAP
__Ecoli_panGEMs__THZPSN3 Thiazole phosphate synthesis GAP
__Ecoli_panGEMs__PAI2T 3-hydroxy-2,4-pentadione 5-phosphate thiolase GAP
DHGLYH Dehydroglycine Hydratase GAP
AMPNTAT aminoalkylphosphonate N-acetyltransferase GAP
ARMEPNS ?-D-ribose 1-methylphosphonate 5-triphosphate synthase GAP
LCARSyi lacaldehyde reductase (S-propane-1,2-diol forming) GAP
RPNTPH RPnTP hydrolase GAP
PRCPD 5-phospho-?-D-ribosyl 1,2-cyclic phosphate phosphodiesterase GAP
MEPNabcpp methylpshophonic acid abc transporter GAP
NOVBCNtex Novobiocin transport via diffusion (extracellular to periplasm) GAP
__Ecoli_panGEMs__2HPTCOAT 2-hydroxycyclohepta-1,4,6-triene-1-carboxyl-CoA thioesterase GAP
DHPTDCs2 4,5-dihydroxy-2,3-pentanedione cyclization (spontaneous) GAP
PACCOAE ring 1,2-phenylacetyl-CoA epoxidase (NADPH) GAP
OXDHCOAT 3-oxo-5,6-dehydrosuberyl-CoA thiolase GAP
HADPCOADH3 3-hydroxyadipyl-CoA dehydrogenase (NAD+) GAP
__Ecoli_panGEMs__FESD2s Iron-sulfur cluster damage (nitrous oxide, spontaneous) GAP