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Gene
GAP
Associated reactions
  BiGG ID Name Gene reaction rule
ACS acetyl-CoA synthetase GAP
PUNP7 purine-nucleoside phosphorylase (Xanthosine) GAP
DHBD 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GAP
ICHORT isochorismatase GAP
HCYSMT homocysteine S-methyltransferase GAP
LACZ b-galactosidase GAP
ICHORS isochorismate synthase GAP
CINNDO Cinnamate dioxygenase GAP
DHPPD 2,3-dihydroxyphenylpropionate dehydrogenase GAP
DHCIND 2,3-dihydroxycinnamate dehydrogenase GAP
BUTCT Acetyl-CoA:butyrate-CoA transferase GAP
TGBPA Tagatose-bisphosphate aldolase GAP
DHAPT Dihydroxyacetone phosphotransferase GAP
UDPGALM UDPgalactopyranose mutase GAP
TDPDRE dTDP-4-dehydrorhamnose 3,5-epimerase GAP
IDOND L-idonate 5-dehydrogenase GAP
IDOND2 L-indonate 5-dehydrogenase (NADP) GAP
CYNTAH Cyanate aminohydrolase GAP
GUAD_1 guanine deaminase GAP
TMAOR2 Trimethylamine N-oxide reductase (demethylmenaquinol 8) GAP
P5CD 1-pyrroline-5-carboxylate dehydrogenase GAP
BETALDHx betaine-aldehyde dehydrogenase GAP
BETALDHy betaine-aldehyde dehydrogenase GAP
ACCOAL acetate-CoA ligase (ADP-forming) GAP
OP4ENH 2-oxopent-4-enoate hydratase GAP
HOPNTAL 4-hydroxy-2-oxopentanoate aldolase GAP
3HPPPNH 3-(3-hydroxy-phenyl)propionate hydroxylase GAP
CSND Cytosine deaminase GAP
HPPPNDO 2,3-dihydroxypheylpropionate 1,2-dioxygenase GAP
MCITL2 methylisocitrate lyase GAP
DHCINDO 2,3-dihydroxycinnamate 1,2-dioxygenase GAP
HKNDDH 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase GAP
HKNTDH_1 2-hydroxy-6-ketononotrienedioate hydrolase GAP
URDGLYCD ureidoglycolate dehydrogenase GAP
MCITS 2-methylcitrate synthase GAP
SERASr (L-seryl)adenylate synthase GAP
PPPNDO Phenylpropanoate Dioxygenase GAP
DMSOR2 Dimethyl sulfoxide reductase (Demethylmenaquinol 8) GAP
3HCINNMH 3-hydroxycinnamate hydroxylase GAP
PACCOAL phenylacetate-CoA ligase GAP
THMDt2pp thymidine transport in via proton symport (periplasm) GAP
URIt2pp uridine transport in via proton symport (periplasm) GAP
XTSNt2rpp Xanthosine transport via proton symport (periplasm) GAP
XYLUt2pp L-xylulose transport in via proton symport (periplasm) GAP
ACACt2pp acetoacetate transport via proton symport (periplasm) GAP
CHOLD choline dehydrogenase GAP
__Ecoli_panGEMs__FEENTERabcpp Fe-enterobactin transport via ABC system (periplasm) GAP
TREH alpha,alpha-trehalase GAP
ACt4pp Na+/Acetate symport (periplasm) GAP
ADNt2pp adenosine transport in via proton symport (periplasm) GAP
ALLabcpp D-allose transport via ABC system (periplasm) GAP
ASNt2rpp L-asparagine reversible transport via proton symport (periplasm) GAP
CSNt2pp cytosine transport in via proton symport (periplasm) GAP
CYNTt2pp Cyanate transport via proton symport (periplasm) GAP
TREHpp alpha,alpha-trehalase (periplasm) GAP
CYTDt2pp cytidine transport in via proton symport (periplasm) GAP
GLYOX3 glyoxalase III GAP
__Ecoli_panGEMs__O16GLCT1 Glucosyltransferase I (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AP2pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP3pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16A4Lpp O16 anitgen (x4) ligase (periplasm) GAP
MALDDH malate decarboxylating oxidoreductase (decarboxylating) GAP
ENTERES Enterochelin Esterase GAP
BUTt2rpp Butyrate transport via proton symport, reversible (periplasm) GAP
__Ecoli_panGEMs__LADGMDH L-alanyl-gamma-D-glutamyl-meso-diaminopimelate hydrolase GAP
FEENTERtpp enterochelin transport (secretion) GAP
__Ecoli_panGEMs__ECA4OALpp Enterobacterial common antigen (x4) O-antigen ligase (periplasm) GAP
__Ecoli_panGEMs__GLCTR3 Glucosyltransferase III (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPT4 Heptosyltransferase IV (LPS core synthesis) GAP
42A12BOOXpp 4-(2-Aminoethyl)-1,2-benzenediol:oxygen oxidoreductase(deaminating)(flavin-containing) GAP
TYROXDApp Tyramine:oxygen oxidoreductase(deaminating)(flavin-containing) (periplasm) GAP
__Ecoli_panGEMs__NTRIR4pp Nitrite Reductase (Menaquinole-8, periplasm) GAP
__Ecoli_panGEMs__NTRIR3pp Nitrite Reductase (Ubiquinole-8, periplasm) GAP
ACANTHAT acetyl-CoA:anthranilate acetyltransferase GAP
__Ecoli_panGEMs__DAPAL 2,3-diaminopropionate amonnia lyase GAP
AGt3 silver transport out via proton antiport GAP
Kabcpp Potassium ABC transporter (periplasm) GAP
3KGK 3-keto-L-gulonate kinase GAP
IDONt2rpp L-idonate transport via proton symport, reversible (periplasm) GAP
PROt4pp Na+/Proline-L symporter (periplasm) GAP
PEAMNOpp Phenethylamine oxidase GAP
ALLPI Allose 6-phosphate isomerase GAP
ALLK Allose kinase GAP
ALLULPE Allulose 6-phosphate epimerase GAP
__Ecoli_panGEMs__O16AT Rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate O-acetyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16GALFT Galactofuranosyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AUNDtpp O16 antigen (flippase, cytoplasm to periplasm) GAP
__Ecoli_panGEMs__O16AP1pp O16 antigen polymerase (periplasm) GAP
HCYSMT2 Homocysteine Methyltransferase GAP
FALDH2 formaldehyde dehydrogenase GAP
MMETt2pp S-methylmethionine permease (periplasm) GAP
GLYCLTt4pp glycolate transport via sodium symport (periplasm) GAP
HCINNMt2rpp 3-hydroxycinnamic acid transport via proton symport, reversible (periplasm) GAP
PPDOy Propane-1,2-diol:NADP+ 1-oxidoreductase GAP
GALTptspp Galactitol transport via PEP:Pyr PTS (periplasm) GAP
HPPPNt2rpp 3-(3-hydroxyphenyl)propionate transport via proton symport, reversible (periplasm) GAP
XAND xanthine dehydrogenase GAP
GALCTD galactarate dehydratase GAP
MCITD 2-methylcitrate dehydratase GAP
HXAND hypoxanthine dehydrogenase GAP
__Ecoli_panGEMs__MOAT3C 3-deoxy-D-manno-octulosonic acid transferase III (LPS core biosynthesis) GAP
CUt3 copper transport out via proton antiport GAP
__Ecoli_panGEMs__RHAT1 Rhamnosyltransferase I (LPS core biosynthesis) GAP
__Ecoli_panGEMs__GALT1 Galactosyltransferase I (LPS core synthesis) GAP
__Ecoli_panGEMs__GLCTR2 Glucosyltransferase II (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPK2 LPS heptose kinase II (LPS core synthesis) GAP
HXCT Acetyl-CoA:hexanoate-CoA transferase GAP
HEXt2rpp hexanoate transport via proton symport, reversible (periplasm) GAP
DHBS 2,3-dihydroxybenzoate adenylate synthase GAP
PDE4 3',5'-cyclic-nucleotide phosphodiesterase GAP
5DGLCNt2rpp 5-Dehydro-D-gluconate transport via proton symport, reversible (periplasm) GAP
PPAt4pp Na+/Propionate symporter (periplasm) GAP
CHLt2pp choline transport via proton symport (periplasm) GAP
REPHACCOAI ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming) GAP
OXCOAHDH oxepin-CoA hydrolase/ 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase (NADP+) GAP
DHACOAH 2,3-dehydroadipyl-CoA hydratase GAP
ALDD19xr aldehyde dehydrogenase (phenylacetaldehyde, NAD) GAP
3OXCOAT 3-oxoadipyl-CoA thiolase GAP
__Ecoli_panGEMs__DHBSZ3FEabcpp 23dhbsz3 Fe III transport via ABC system periplasm GAP
DXYLTD D-xylonate dehydratase GAP
2DDARAA 2-dehydro-3-deoxy-D-arabinonate Aldolase GAP
23DOGULNt4pp Na+/ 2,3-Dioxo-L-gulonate symport (periplasm) GAP
__Ecoli_panGEMs__FEENTERES Enterochelin Esterase (Fe containing) GAP
SQVOSI sulfoquinovose isomerase GAP
6D6SPA 6-deoxy-6-sulfofructose-1-phosphate aldolase GAP
__Ecoli_panGEMs__GHBDHx Gamma-hydroxybutyrate dehydrogenase (NADH) GAP
DHPStr 2,3-dihydroxypropane 1-sulfonate transporter GAP
SQtr sulfoquinovose transporter GAP
DHPStex 2,3-dihydroxypropane 1-sulfonate transport via diffusion GAP
SHGO S-2-hydroxyglutarate oxidase GAP
CHOLATEtpp cholate transport via proton antiport GAP
4ABZGLUH p-aminobenzoyl-glutamate hydrolase GAP
4ABZGLUtr p-aminobenzoyl glutamate:H+ symporter GAP
PHDA phenylhydantoinase GAP
PACOAT phenylacetyl-CoA thioesterase GAP
HPACOAT hydroxyphenylacetyl-CoA thioesterase GAP
__Ecoli_panGEMs__PUACGAMtr Transport of poly-?-1,6-N-acetyl-D-glucosamine (poly-?-1,6-N-acetyl-D-glucosamine synthase) GAP
DC6PDA chito-oligosaccharide mono-deacetylase GAP
5DGLCNR 5-dehydro-D-gluconate reductase GAP
LCTStpp Lactose transport via proton symport (periplasm) GAP
__Ecoli_panGEMs__PUACGAMS Poly-?-1,6-N-acetyl-D-glucosamine synthase GAP
6D6SFK 6-deoxy-6-sulfofructose kinase GAP
3SLAR 3-sulfolactaldehyde reductase GAP
SQtex sulphoquinovose transport via diffusion GAP
RHMND L-rhamnonate dehydratase GAP
3HBZCT 3-hydroxybenzoyl-CoA thioesterase GAP
URATEtpp uric acid transporter GAP
SQGH sulfoquinovosidase GAP
LCARSyi lacaldehyde reductase (S-propane-1,2-diol forming) GAP
__Ecoli_panGEMs__MOCDS Molybdopterin cytidine dinucleotide synthase GAP
MEPNabcpp methylpshophonic acid abc transporter GAP
PROD3 Proline dehydrogenase (q8) GAP
__Ecoli_panGEMs__2HPTCOAT 2-hydroxycyclohepta-1,4,6-triene-1-carboxyl-CoA thioesterase GAP
MC6PH monoacetylchitobiose-6-phosphate hydrolase GAP
PACCOAE ring 1,2-phenylacetyl-CoA epoxidase (NADPH) GAP
OXDHCOAT 3-oxo-5,6-dehydrosuberyl-CoA thiolase GAP
HADPCOADH3 3-hydroxyadipyl-CoA dehydrogenase (NAD+) GAP