O2tex in 83334_500_json
- oxygen transport via diffusion (extracellular to periplasm)
- o2_e:0 ⇌ o2_p:0
- Bounds: (-1000.0, 1000.0)
- Universal Reaction: O2tex
Gene Reaction Rule
GOEBNIBM_04489 or GOEBNIBM_03719 or GOEBNIBM_02842 or GOEBNIBM_01708
| BiGG ID | Name | |
|---|---|---|
 |
GOEBNIBM_01708 | None |
|
GOEBNIBM_04489 | None |
|
GOEBNIBM_02842 | None |
|
GOEBNIBM_03719 | None |
MEMOTE Flags
This reaction was flagged in the following MEMOTE tests:
There are a total of 5 reversible oxygen-containing reactions (9.80% of all oxygen-containing reactions): O2tpp, O2Stex, EX_o2_e, INOSTO, O2tex
The directionality of oxygen-producing/-consuming reactions affects the model's ability to grow anaerobically i.e. create faux-anaerobic organisms. This test reports how many of these oxygen-containing reactions are reversible. This test does not have any mandatory 'pass' criteria. Implementation: First, find the metabolite representing atmospheric oxygen in the model on the basis of an internal mapping table or by specifically looking for the formula "O2". Then, find all reactions that produce or consume oxygen and report those that are reversible.