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Gene
GAP
Associated reactions
  BiGG ID Name Gene reaction rule
__Ecoli_panGEMs__14GLUCANabcpp 1,4-alpha-D-glucan transport via ABC system (periplasm) GAP
2DDARAA 2-dehydro-3-deoxy-D-arabinonate Aldolase GAP
__Ecoli_panGEMs__2HPTCOAT 2-hydroxycyclohepta-1,4,6-triene-1-carboxyl-CoA thioesterase GAP
3HCINNMH 3-hydroxycinnamate hydroxylase GAP
3HPPPNH 3-(3-hydroxy-phenyl)propionate hydroxylase GAP
3OXCOAT 3-oxoadipyl-CoA thiolase GAP
42A12BOOXpp 4-(2-Aminoethyl)-1,2-benzenediol:oxygen oxidoreductase(deaminating)(flavin-containing) GAP
5DGLCNR 5-dehydro-D-gluconate reductase GAP
5DGLCNt2rpp 5-Dehydro-D-gluconate transport via proton symport, reversible (periplasm) GAP
ACALDtpp acetaldehyde reversible transport (periplasm) GAP
ACANTHAT acetyl-CoA:anthranilate acetyltransferase GAP
ACCOAL acetate-CoA ligase (ADP-forming) GAP
ACONIs aconitate isomerase (spontaneous) GAP
ACS acetyl-CoA synthetase GAP
AI2abcpp autoinducer-2 ABC transporter GAP
AI2K autoinducer-2 kinase GAP
ALDD19xr aldehyde dehydrogenase (phenylacetaldehyde, NAD) GAP
ALLabcpp D-allose transport via ABC system (periplasm) GAP
ALLK Allose kinase GAP
ALLPI Allose 6-phosphate isomerase GAP
ALLTAMH2 Allantoate amidinohydrolase GAP
ALLTN allantoinase GAP
ALLTNt2rpp allantoin transport in via proton symport (periplasm) GAP
ALLULPE Allulose 6-phosphate epimerase GAP
AMPNTAT aminoalkylphosphonate N-acetyltransferase GAP
AOBUTDs L-2-amino-3-oxobutanoate decarboxylation (spontaneous) GAP
ARBt3ipp L-arabinose transport via proton antiport (periplasm) GAP
__Ecoli_panGEMs__ARBTNexs Aerobactin Fe-loading reaction (spontaneous) GAP
ARMEPNS ?-D-ribose 1-methylphosphonate 5-triphosphate synthase GAP
ASPt2pp L-aspartate transport in via proton symport (periplasm) GAP
ATPHs ATP amine hydrolysis (spontaneous) GAP
BETALDHx betaine-aldehyde dehydrogenase GAP
BETALDHy betaine-aldehyde dehydrogenase GAP
CADVtpp Lysine/Cadaverine antiporter (periplasm) GAP
CBMD carbamate deaminase GAP
CHLabcpp choline transport via ABC system (periplasm) GAP
CHLt3pp choline transport via proton antiport (periplasm) GAP
CHOLD choline dehydrogenase GAP
CO2tpp CO2 transporter via diffusion (periplasm) GAP
__Ecoli_panGEMs__CPGNexs Coprogen Fe-loading reaction (spontaneaous) GAP
CSND Cytosine deaminase GAP
CSNt2pp cytosine transport in via proton symport (periplasm) GAP
CYNTAH Cyanate aminohydrolase GAP
CYNTt2pp Cyanate transport via proton symport (periplasm) GAP
__Ecoli_panGEMs__DAPAL 2,3-diaminopropionate amonnia lyase GAP
DATPHs dATP amine hydrolysis (spontaneous) GAP
DDCAtexi Fatty acid (dodecanoate) transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
DHACOAH 2,3-dehydroadipyl-CoA hydratase GAP
DHAPT Dihydroxyacetone phosphotransferase GAP
DHCINDO 2,3-dihydroxycinnamate 1,2-dioxygenase GAP
DHGLYH Dehydroglycine Hydratase GAP
DHPTDCs2 4,5-dihydroxy-2,3-pentanedione cyclization (spontaneous) GAP
DMSOtpp Dimethyl sulfoxide transport via diffusion (periplasm) GAP
DXYLTD D-xylonate dehydratase GAP
__Ecoli_panGEMs__ECA4OALpp Enterobacterial common antigen (x4) O-antigen ligase (periplasm) GAP
ETOHtrpp ethanol reversible transport via diffusion (periplasm) GAP
FALDH2 formaldehyde dehydrogenase GAP
FALDtpp formaldehyde transport via diffusion (periplasm) GAP
FALGTHLs formaldehyde glutathione ligase (spontaneous) GAP
__Ecoli_panGEMs__FE3DCITabcpp Iron transport from ferric-dicitrate via ABC system (periplasm) GAP
__Ecoli_panGEMs__FE3DCITexs Dicitrate Fe(III) binding (spontaneous) GAP
__Ecoli_panGEMs__FE3DCITtonex Ferric-dicitrate transport via ton system (extracellular) GAP
__Ecoli_panGEMs__FE3HOXexs Fe(III) hydroxamate Fe-loading reaction (spontaneaous) GAP
__Ecoli_panGEMs__FECRMexs Ferrichrome Fe(III)-loading reaction (spontaneous) GAP
__Ecoli_panGEMs__FEENTERexs Enterobactin Fe(III) binding (spontaneous) GAP
__Ecoli_panGEMs__FEOXAMexs Ferroxamine Fe3-loading reaction (spontaneous) GAP
__Ecoli_panGEMs__FESD1s Iron-sulfur cluster damage (peroxide, spontaneous) GAP
__Ecoli_panGEMs__FESD2s Iron-sulfur cluster damage (nitrous oxide, spontaneous) GAP
FHL Formate-hydrogen lyase GAP
FRULYSDG Fructoselysine phosphate deglycase GAP
FRULYSE fructoselysine 3-epimerase GAP
FRULYSK Fructoselysine Kinase GAP
FRULYSt2pp Fructoselysine transport via proton symport (periplasm) GAP
G5SADs L-glutamate 5-semialdehyde dehydratase (spontaneous) GAP
__Ecoli_panGEMs__GALT1 Galactosyltransferase I (LPS core synthesis) GAP
GALTptspp Galactitol transport via PEP:Pyr PTS (periplasm) GAP
GCALDD Glycolaldehyde dehydrogenase GAP
__Ecoli_panGEMs__GLCTR2 Glucosyltransferase II (LPS core synthesis) GAP
__Ecoli_panGEMs__GLCTR3 Glucosyltransferase III (LPS core synthesis) GAP
GLUt2rpp L-glutamate transport via proton symport, reversible (periplasm) GAP
GLXCL glyoxalate carboligase GAP
GLYBt3pp Glycine betaine transport via proton antiport (periplasm) GAP
GLYCK glycerate kinase GAP
GLYCTO2 Glycolate oxidase GAP
GLYCTO3 Glycolate oxidase GAP
GLYCTO4 Glycolate oxidase GAP
GTPHs GTP amine hydrolysis (spontaneous) GAP
H2St1pp h2s transport (periplasm) GAP
H2tpp hydrogen transport diffusion (periplasm) GAP
HADPCOADH3 3-hydroxyadipyl-CoA dehydrogenase (NAD+) GAP
HCINNMt2rpp 3-hydroxycinnamic acid transport via proton symport, reversible (periplasm) GAP
HCYSMT homocysteine S-methyltransferase GAP
HCYSMT2 Homocysteine Methyltransferase GAP
HDCAtexi Hexadecanoate transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
HDCEAtexi Hexadecenoate transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
__Ecoli_panGEMs__HEPK2 LPS heptose kinase II (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPT3 Heptosyltransferase III (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPT4 Heptosyltransferase IV (LPS core synthesis) GAP
HKNDDH 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase GAP
HKNTDH_1 2-hydroxy-6-ketononotrienedioate hydrolase GAP
HOPNTAL 4-hydroxy-2-oxopentanoate aldolase GAP
HPACOAT hydroxyphenylacetyl-CoA thioesterase GAP
HPPPNDO 2,3-dihydroxypheylpropionate 1,2-dioxygenase GAP
HPPPNt2rpp 3-(3-hydroxyphenyl)propionate transport via proton symport, reversible (periplasm) GAP
HPYRI hydroxypyruvate isomerase GAP
HXAND hypoxanthine dehydrogenase GAP
IDONt2rpp L-idonate transport via proton symport, reversible (periplasm) GAP
INOSTt4pp Na+/myo-inositol symporter (periplasm) GAP
LACZ b-galactosidase GAP
LCADi lactaldehyde dehydrogenase GAP
LCARSyi lacaldehyde reductase (S-propane-1,2-diol forming) GAP
LCTStpp Lactose transport via proton symport (periplasm) GAP
LPLIPAL1A120pp Lysophospholipase L1 (2-acylglycerophosphotidate, n-C12:0) (periplasm) GAP
__Ecoli_panGEMs__LPLIPAL1A140pp Lysophospholipase L1 (2-acylglycerophosphotidate, n-C14:0) (periplasm) GAP
__Ecoli_panGEMs__LPLIPAL1A141pp Lysophospholipase L1 (2-acylglycerophosphotidate, n-C14:1) (periplasm) GAP
LPLIPAL1A160pp Lysophospholipase L1 (2-acylglycerophosphotidate, n-C16:0) (periplasm) GAP
__Ecoli_panGEMs__LPLIPAL1A161pp Lysophospholipase L1 (2-acylglycerophosphotidate, n-C16:1) (periplasm) GAP
LPLIPAL1A180pp Lysophospholipase L1 (2-acylglycerophosphotidate, n-C18:0) (periplasm) GAP
__Ecoli_panGEMs__LPLIPAL1A181pp Lysophospholipase L1 (2-acylglycerophosphotidate, n-C18:1) (periplasm) GAP
LPLIPAL1E120pp Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C12:0) (periplasm) GAP
LPLIPAL1E140pp Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C14:0) (periplasm) GAP
__Ecoli_panGEMs__LPLIPAL1E141pp Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C14:1) (periplasm) GAP
LPLIPAL1E160pp Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C16:0) (periplasm) GAP
__Ecoli_panGEMs__LPLIPAL1E161pp Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C16:1) (periplasm) GAP
LPLIPAL1E180pp Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C18:0) (periplasm) GAP
__Ecoli_panGEMs__LPLIPAL1E181pp Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C18:1) (periplasm) GAP
__Ecoli_panGEMs__LPLIPAL1G120pp Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C12:0) (periplasm) GAP
LPLIPAL1G140pp Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C14:0) (periplasm) GAP
__Ecoli_panGEMs__LPLIPAL1G141pp Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C14:1) (periplasm) GAP
LPLIPAL1G160pp Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C16:0) (periplasm) GAP
__Ecoli_panGEMs__LPLIPAL1G161pp Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C16:1) (periplasm) GAP
LPLIPAL1G180pp Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C18:0) (periplasm) GAP
__Ecoli_panGEMs__LPLIPAL1G181pp Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C18:1) (periplasm) GAP
M1PD mannitol-1-phosphate 5-dehydrogenase GAP
MALTabcpp maltose transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__MALTHXabcpp Maltohexaose transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__MALTPTabcpp Maltopentaose transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__MALTTRabcpp Maltotriose transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__MALTTTRabcpp Maltotetraose transport via ABC system (periplasm) GAP
MANGLYCptspp 2-O-alpha-mannosyl-D-glycerate transport via PEP:Pyr PTS (periplasm) GAP
MANPGH 2-O-alpha-mannosyl-6-phosphate-D-glycerate hydrolase GAP
MCITD 2-methylcitrate dehydratase GAP
MCITL2 methylisocitrate lyase GAP
MCITS 2-methylcitrate synthase GAP
MCPST 3-mercaptopyruvate sulfurtransferase GAP
MELIBt3ipp melibiose transport in via antiport (periplasm) GAP
MEOHtrpp Methanol reversible transport via diffusion (periplasm) GAP
MEPNabcpp methylpshophonic acid abc transporter GAP
METOX1s methionine oxidation (spontaneous) GAP
METOX2s methionine oxidation 2 (spontaneous) GAP
MMETt2pp S-methylmethionine permease (periplasm) GAP
__Ecoli_panGEMs__MOAT3C 3-deoxy-D-manno-octulosonic acid transferase III (LPS core biosynthesis) GAP
MTHTHFSs (2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran synthesis (spontaneous) GAP
N2Otpp nitrious oxide transport (diffusion) GAP
NOtpp NO transport (diffusion) GAP
NOVBCNtex Novobiocin transport via diffusion (extracellular to periplasm) GAP
__Ecoli_panGEMs__NTRIR3pp Nitrite Reductase (Ubiquinole-8, periplasm) GAP
__Ecoli_panGEMs__NTRIR4pp Nitrite Reductase (Menaquinole-8, periplasm) GAP
__Ecoli_panGEMs__O16A4Lpp O16 anitgen (x4) ligase (periplasm) GAP
__Ecoli_panGEMs__O16AP1pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP2pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP3pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AT Rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate O-acetyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AUNDtpp O16 antigen (flippase, cytoplasm to periplasm) GAP
__Ecoli_panGEMs__O16GALFT Galactofuranosyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16GLCT1 Glucosyltransferase I (LPS O16 antigen biosynthesis) GAP
O2tpp o2 transport via diffusion (periplasm) GAP
OCDCAtexi Octadecanoate transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
OCDCEAtexi Octadecenoate (n-C18:1) transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
OMCDC 2-Oxo-4-methyl-3-carboxypentanoate decarboxylation GAP
OP4ENH 2-oxopent-4-enoate hydratase GAP
OXCOAHDH oxepin-CoA hydrolase/ 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase (NADP+) GAP
OXDHCOAT 3-oxo-5,6-dehydrosuberyl-CoA thiolase GAP
PACCOAE ring 1,2-phenylacetyl-CoA epoxidase (NADPH) GAP
PACCOAL phenylacetate-CoA ligase GAP
PACOAT phenylacetyl-CoA thioesterase GAP
__Ecoli_panGEMs__PAI2T 3-hydroxy-2,4-pentadione 5-phosphate thiolase GAP
PEAMNOpp Phenethylamine oxidase GAP
PHDA phenylhydantoinase GAP
PPDOy Propane-1,2-diol:NADP+ 1-oxidoreductase GAP
PRCPD 5-phospho-?-D-ribosyl 1,2-cyclic phosphate phosphodiesterase GAP
PSCLYSt2pp psicoselysine transport via proton symport (periplasm) GAP
PTRCORNt7pp putrescine/ornithine antiporter (periplasm) GAP
__Ecoli_panGEMs__PUACGAMS Poly-?-1,6-N-acetyl-D-glucosamine synthase GAP
__Ecoli_panGEMs__PUACGAMtr Transport of poly-?-1,6-N-acetyl-D-glucosamine (poly-?-1,6-N-acetyl-D-glucosamine synthase) GAP
R15BPK ribose-1,5-bisphosphokinase GAP
REPHACCOAI ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming) GAP
RFAMPtex Rifampin transport via diffusion (extracellular to periplasm) GAP
__Ecoli_panGEMs__RHAT1 Rhamnosyltransferase I (LPS core biosynthesis) GAP
RPNTPH RPnTP hydrolase GAP
SELR selenate reductase GAP
SO2tpp SO2 transport via diffusion (periplasm) GAP
TDPDRE dTDP-4-dehydrorhamnose 3,5-epimerase GAP
__Ecoli_panGEMs__THZPSN3 Thiazole phosphate synthesis GAP
TRE6PP trehalose-phosphatase GAP
TRE6PS alpha,alpha-trehalose-phosphate synthase (UDP-forming) GAP
TTDCAtexi Tetradecanoate transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
TTDCEAtexi Tetradecenoate transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
TYROXDApp Tyramine:oxygen oxidoreductase(deaminating)(flavin-containing) (periplasm) GAP
UDPGALM UDPgalactopyranose mutase GAP
UGCIAMH ureidoglycine aminohydrolase GAP
UGLYCH Ureidoglycolate hydrolase GAP
URDGLYCD ureidoglycolate dehydrogenase GAP
XAND xanthine dehydrogenase GAP
XYLt2pp D-xylose transport in via proton symport (periplasm) GAP