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Gene
GAP
Associated reactions
  BiGG ID Name Gene reaction rule
__Ecoli_panGEMs__14GLUCANabcpp 1,4-alpha-D-glucan transport via ABC system (periplasm) GAP
23DOGULNt4pp Na+/ 2,3-Dioxo-L-gulonate symport (periplasm) GAP
2DDARAA 2-dehydro-3-deoxy-D-arabinonate Aldolase GAP
2DGLCptspp 2-Deoxy-D-glucose transport via PEP:Pyr PTS (periplasm) GAP
__Ecoli_panGEMs__2HPTCOAT 2-hydroxycyclohepta-1,4,6-triene-1-carboxyl-CoA thioesterase GAP
3AMACHYD 3-aminoacrylate hydrolase GAP
3HCINNMH 3-hydroxycinnamate hydroxylase GAP
3HPPPNH 3-(3-hydroxy-phenyl)propionate hydroxylase GAP
3KGK 3-keto-L-gulonate kinase GAP
3OXCOAT 3-oxoadipyl-CoA thiolase GAP
3SLAR 3-sulfolactaldehyde reductase GAP
42A12BOOXpp 4-(2-Aminoethyl)-1,2-benzenediol:oxygen oxidoreductase(deaminating)(flavin-containing) GAP
5DGLCNR 5-dehydro-D-gluconate reductase GAP
5DGLCNt2rpp 5-Dehydro-D-gluconate transport via proton symport, reversible (periplasm) GAP
6D6SFK 6-deoxy-6-sulfofructose kinase GAP
6D6SPA 6-deoxy-6-sulfofructose-1-phosphate aldolase GAP
ABUTD Aminobutyraldehyde dehydrogenase GAP
ACACCT acetyl-CoA:acetoacetyl-CoA transferase GAP
ACACt2pp acetoacetate transport via proton symport (periplasm) GAP
ACALDtpp acetaldehyde reversible transport (periplasm) GAP
ACANTHAT acetyl-CoA:anthranilate acetyltransferase GAP
ACBIPGT Adenosyl cobinamide phosphate guanyltransferase GAP
ACMANAptspp N-acetyl-D-mannosamine transport via PTS (periplasm) GAP
__Ecoli_panGEMs__ACOAD1fr Acyl-CoA dehydrogenase (butanoyl-CoA) GAP
ACONIs aconitate isomerase (spontaneous) GAP
ADCS 4-amino-4-deoxychorismate synthase GAP
ADNt2pp adenosine transport in via proton symport (periplasm) GAP
ADOCBIK Adenosyl cobinamide kinase GAP
AGt3 silver transport out via proton antiport GAP
AI2abcpp autoinducer-2 ABC transporter GAP
AI2K autoinducer-2 kinase GAP
ALAALAD D-alanine-D-alanine dipeptidase GAP
ALDD19xr aldehyde dehydrogenase (phenylacetaldehyde, NAD) GAP
ALLabcpp D-allose transport via ABC system (periplasm) GAP
ALLK Allose kinase GAP
ALLPI Allose 6-phosphate isomerase GAP
ALLTAMH2 Allantoate amidinohydrolase GAP
ALLTN allantoinase GAP
ALLTNt2rpp allantoin transport in via proton symport (periplasm) GAP
ALLULPE Allulose 6-phosphate epimerase GAP
ALR2x aldose reductase (methylglyoxal) (nadh) GAP
AOBUTDs L-2-amino-3-oxobutanoate decarboxylation (spontaneous) GAP
__Ecoli_panGEMs__ARBTNexs Aerobactin Fe-loading reaction (spontaneous) GAP
ASNt2rpp L-asparagine reversible transport via proton symport (periplasm) GAP
ASPabcpp L-aspartate transport via ABC system (periplasm) GAP
ATPHs ATP amine hydrolysis (spontaneous) GAP
BETALDHx betaine-aldehyde dehydrogenase GAP
BETALDHy betaine-aldehyde dehydrogenase GAP
BUTCT Acetyl-CoA:butyrate-CoA transferase GAP
BUTt2rpp Butyrate transport via proton symport, reversible (periplasm) GAP
CADVtpp Lysine/Cadaverine antiporter (periplasm) GAP
CBMD carbamate deaminase GAP
CHLabcpp choline transport via ABC system (periplasm) GAP
CHLt3pp choline transport via proton antiport (periplasm) GAP
CHOLD choline dehydrogenase GAP
CHTBSptspp chitobiose transport via PEP:Pyr PTS (periplasm) GAP
CITL Citrate lyase GAP
CITt7pp Citrate transport via succinate antiport (periplasm) GAP
CO2tpp CO2 transporter via diffusion (periplasm) GAP
__Ecoli_panGEMs__CPGNexs Coprogen Fe-loading reaction (spontaneaous) GAP
CSND Cytosine deaminase GAP
CSNt2pp cytosine transport in via proton symport (periplasm) GAP
CURR NADPH-dependent curcumin reductase GAP
CUt3 copper transport out via proton antiport GAP
CYNTAH Cyanate aminohydrolase GAP
CYNTt2pp Cyanate transport via proton symport (periplasm) GAP
CYTD cytidine deaminase GAP
CYTDt2pp cytidine transport in via proton symport (periplasm) GAP
__Ecoli_panGEMs__DAPAL 2,3-diaminopropionate amonnia lyase GAP
DATPHs dATP amine hydrolysis (spontaneous) GAP
DC6PDA chito-oligosaccharide mono-deacetylase GAP
DCYTD deoxycytidine deaminase GAP
DDGALK 2-dehydro-3-deoxygalactonokinase GAP
DDPGALA 2-dehydro-3-deoxy-6-phosphogalactonate aldolase GAP
DHACOAH 2,3-dehydroadipyl-CoA hydratase GAP
DHCINDO 2,3-dihydroxycinnamate 1,2-dioxygenase GAP
DHCURR NADPH-dependent dihydrocurcumin reductase GAP
DHGLYH Dehydroglycine Hydratase GAP
DHPStex 2,3-dihydroxypropane 1-sulfonate transport via diffusion GAP
DHPStr 2,3-dihydroxypropane 1-sulfonate transporter GAP
DHPTDCs2 4,5-dihydroxy-2,3-pentanedione cyclization (spontaneous) GAP
DMSOR1pp Dimethyl sulfoxide reductase (Menaquinol 8) (periplasm) GAP
DMSOR2pp Dimethyl sulfoxide reductase (Demethylmenaquinol 8) (periplasm) GAP
DMSOtpp Dimethyl sulfoxide transport via diffusion (periplasm) GAP
DXYLTD D-xylonate dehydratase GAP
__Ecoli_panGEMs__ECA4OALpp Enterobacterial common antigen (x4) O-antigen ligase (periplasm) GAP
ETOHtrpp ethanol reversible transport via diffusion (periplasm) GAP
__Ecoli_panGEMs__FA100ACPHi Fatty-acyl-ACP hydrolase GAP
__Ecoli_panGEMs__FA120ACPHi Fatty-acyl-ACP hydrolase GAP
__Ecoli_panGEMs__FA140ACPHi Fatty-acyl-ACP hydrolase GAP
__Ecoli_panGEMs__FA141ACPHi Fatty-acyl-ACP hydrolase GAP
__Ecoli_panGEMs__FA160ACPHi Fatty-acyl-ACP hydrolase GAP
__Ecoli_panGEMs__FA161ACPHi Fatty-acyl-ACP hydrolase GAP
__Ecoli_panGEMs__FA80ACPHi Fatty-acyl-ACP hydrolase GAP
FALDH2 formaldehyde dehydrogenase GAP
FALDtpp formaldehyde transport via diffusion (periplasm) GAP
FALGTHLs formaldehyde glutathione ligase (spontaneous) GAP
__Ecoli_panGEMs__FE3DCITabcpp Iron transport from ferric-dicitrate via ABC system (periplasm) GAP
__Ecoli_panGEMs__FE3DCITexs Dicitrate Fe(III) binding (spontaneous) GAP
__Ecoli_panGEMs__FE3DCITtonex Ferric-dicitrate transport via ton system (extracellular) GAP
__Ecoli_panGEMs__FE3HOXexs Fe(III) hydroxamate Fe-loading reaction (spontaneaous) GAP
__Ecoli_panGEMs__FE3HOXtonex Fe(III)hydroxamine transport via ton system (extracellular) GAP
__Ecoli_panGEMs__FECRMexs Ferrichrome Fe(III)-loading reaction (spontaneous) GAP
__Ecoli_panGEMs__FECRMtonex Ferrichrome transport via ton system (extracellular) GAP
__Ecoli_panGEMs__FEENTERexs Enterobactin Fe(III) binding (spontaneous) GAP
__Ecoli_panGEMs__FEOXAMexs Ferroxamine Fe3-loading reaction (spontaneous) GAP
__Ecoli_panGEMs__FEOXAMtonex Ferroxamine transport via ton system (extracellular) GAP
__Ecoli_panGEMs__FESD1s Iron-sulfur cluster damage (peroxide, spontaneous) GAP
__Ecoli_panGEMs__FESD2s Iron-sulfur cluster damage (nitrous oxide, spontaneous) GAP
FRUpts2pp Fructose transport via PEP:Pyr PTS (f6p generating) (periplasm) GAP
FRUURt2rpp D-fructuronate transport via proton symport, reversible (periplasm) GAP
G5SADs L-glutamate 5-semialdehyde dehydratase (spontaneous) GAP
GAL1PPpp D-galactose 1-phosphatase GAP
GALCTD galactarate dehydratase GAP
GALCTND galactonate dehydratase GAP
GALCTNt2pp D-galactonate transport via proton symport (periplasm) GAP
__Ecoli_panGEMs__GALT1 Galactosyltransferase I (LPS core synthesis) GAP
GALTptspp Galactitol transport via PEP:Pyr PTS (periplasm) GAP
GAMptspp D-glucosamine transport via PEP:Pyr PTS (periplasm) GAP
GCALDD Glycolaldehyde dehydrogenase GAP
__Ecoli_panGEMs__GHBDHx Gamma-hydroxybutyrate dehydrogenase (NADH) GAP
__Ecoli_panGEMs__GLCTR2 Glucosyltransferase II (LPS core synthesis) GAP
__Ecoli_panGEMs__GLCTR3 Glucosyltransferase III (LPS core synthesis) GAP
GLUabcpp L-glutamate transport via ABC system (periplasm) GAP
GLXCL glyoxalate carboligase GAP
GLYBt3pp Glycine betaine transport via proton antiport (periplasm) GAP
GLYCK glycerate kinase GAP
GLYCTO2 Glycolate oxidase GAP
GLYCTO3 Glycolate oxidase GAP
GLYCTO4 Glycolate oxidase GAP
GTPHs GTP amine hydrolysis (spontaneous) GAP
GUAD_1 guanine deaminase GAP
H2St1pp h2s transport (periplasm) GAP
H2tpp hydrogen transport diffusion (periplasm) GAP
HADPCOADH3 3-hydroxyadipyl-CoA dehydrogenase (NAD+) GAP
HCINNMt2rpp 3-hydroxycinnamic acid transport via proton symport, reversible (periplasm) GAP
HCYSMT homocysteine S-methyltransferase GAP
HCYSMT2 Homocysteine Methyltransferase GAP
__Ecoli_panGEMs__HEPK2 LPS heptose kinase II (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPT3 Heptosyltransferase III (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPT4 Heptosyltransferase IV (LPS core synthesis) GAP
HEXt2rpp hexanoate transport via proton symport, reversible (periplasm) GAP
HKNDDH 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase GAP
HKNTDH_1 2-hydroxy-6-ketononotrienedioate hydrolase GAP
HOPNTAL 4-hydroxy-2-oxopentanoate aldolase GAP
HPACOAT hydroxyphenylacetyl-CoA thioesterase GAP
HPPPNDO 2,3-dihydroxypheylpropionate 1,2-dioxygenase GAP
HPPPNt2rpp 3-(3-hydroxyphenyl)propionate transport via proton symport, reversible (periplasm) GAP
HPYRI hydroxypyruvate isomerase GAP
HPYRP 3-phosphohydroxypyruvate phosphatase GAP
HXAND hypoxanthine dehydrogenase GAP
HXCT Acetyl-CoA:hexanoate-CoA transferase GAP
IDOND L-idonate 5-dehydrogenase GAP
IDOND2 L-indonate 5-dehydrogenase (NADP) GAP
IDONt2rpp L-idonate transport via proton symport, reversible (periplasm) GAP
INOSTt4pp Na+/myo-inositol symporter (periplasm) GAP
LACZ b-galactosidase GAP
LACZpp b-galactosidase GAP
LCADi lactaldehyde dehydrogenase GAP
LCARSyi lacaldehyde reductase (S-propane-1,2-diol forming) GAP
LCTStpp Lactose transport via proton symport (periplasm) GAP
LDH_D D-lactate dehydrogenase GAP
LDH_D2 D-lactate dehydrogenase GAP
M1PD mannitol-1-phosphate 5-dehydrogenase GAP
MALTabcpp maltose transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__MALTHXabcpp Maltohexaose transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__MALTPTabcpp Maltopentaose transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__MALTTRabcpp Maltotriose transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__MALTTTRabcpp Maltotetraose transport via ABC system (periplasm) GAP
MANAO Mannonate oxidoreductase GAP
MANptspp D-mannose transport via PEP:Pyr PTS (periplasm) GAP
MC6PH monoacetylchitobiose-6-phosphate hydrolase GAP
MCITD 2-methylcitrate dehydratase GAP
MCITL2 methylisocitrate lyase GAP
MCITS 2-methylcitrate synthase GAP
MELIBt2pp melibiose transport in via symport (periplasm) GAP
MEOHtrpp Methanol reversible transport via diffusion (periplasm) GAP
MEPNabcpp methylpshophonic acid abc transporter GAP
METNA L-amino acid N-acyltransferase GAP
METOX1s methionine oxidation (spontaneous) GAP
METOX2s methionine oxidation 2 (spontaneous) GAP
MMETt2pp S-methylmethionine permease (periplasm) GAP
MN2tpp manganese transport in via permease (no H+) GAP
MNNH D-mannonate hydrolyase GAP
__Ecoli_panGEMs__MOAT3C 3-deoxy-D-manno-octulosonic acid transferase III (LPS core biosynthesis) GAP
__Ecoli_panGEMs__MOCDS Molybdopterin cytidine dinucleotide synthase GAP
MTHTHFSs (2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran synthesis (spontaneous) GAP
N2Otpp nitrious oxide transport (diffusion) GAP
NOtpp NO transport (diffusion) GAP
NOVBCNtex Novobiocin transport via diffusion (extracellular to periplasm) GAP
__Ecoli_panGEMs__O16A4Lpp O16 anitgen (x4) ligase (periplasm) GAP
__Ecoli_panGEMs__O16AP1pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP2pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP3pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AT Rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate O-acetyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AUNDtpp O16 antigen (flippase, cytoplasm to periplasm) GAP
__Ecoli_panGEMs__O16GALFT Galactofuranosyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16GLCT1 Glucosyltransferase I (LPS O16 antigen biosynthesis) GAP
O2tpp o2 transport via diffusion (periplasm) GAP
OMCDC 2-Oxo-4-methyl-3-carboxypentanoate decarboxylation GAP
OP4ENH 2-oxopent-4-enoate hydratase GAP
OXCOAHDH oxepin-CoA hydrolase/ 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase (NADP+) GAP
OXDHCOAT 3-oxo-5,6-dehydrosuberyl-CoA thiolase GAP
PACCOAE ring 1,2-phenylacetyl-CoA epoxidase (NADPH) GAP
PACCOAL phenylacetate-CoA ligase GAP
PACOAT phenylacetyl-CoA thioesterase GAP
__Ecoli_panGEMs__PAI2I Phospho-AI-2 isomerase GAP
__Ecoli_panGEMs__PAI2T 3-hydroxy-2,4-pentadione 5-phosphate thiolase GAP
PDE4 3',5'-cyclic-nucleotide phosphodiesterase GAP
PEAMNOpp Phenethylamine oxidase GAP
PHDA phenylhydantoinase GAP
POAACR peroxyaminoacrylate reductase GAP
__Ecoli_panGEMs__POR5 Pyruvate synthase GAP
PPDOy Propane-1,2-diol:NADP+ 1-oxidoreductase GAP
PTRCORNt7pp putrescine/ornithine antiporter (periplasm) GAP
PTRCTA Putrescine Transaminase GAP
__Ecoli_panGEMs__PUACGAMS Poly-?-1,6-N-acetyl-D-glucosamine synthase GAP
__Ecoli_panGEMs__PUACGAMtr Transport of poly-?-1,6-N-acetyl-D-glucosamine (poly-?-1,6-N-acetyl-D-glucosamine synthase) GAP
PUNP7 purine-nucleoside phosphorylase (Xanthosine) GAP
PYROX pyrimidine oxygenase GAP
REPHACCOAI ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming) GAP
RFAMPtex Rifampin transport via diffusion (extracellular to periplasm) GAP
__Ecoli_panGEMs__RHAT1 Rhamnosyltransferase I (LPS core biosynthesis) GAP
SELR selenate reductase GAP
SERtpp L-serine export via facilitated transport GAP
SO2tpp SO2 transport via diffusion (periplasm) GAP
SPMDAT1 Spermidine acetyltransferase GAP
SPMDAT2 Spermidine acetyltransferase (N8) GAP
SQGH sulfoquinovosidase GAP
SQtex sulphoquinovose transport via diffusion GAP
SQtr sulfoquinovose transporter GAP
SQVOSI sulfoquinovose isomerase GAP
TDPDRE dTDP-4-dehydrorhamnose 3,5-epimerase GAP
TDPDRR dTDP-4-dehydrorhamnose reductase GAP
TEO2M tellurite methyltransferase GAP
THMDt2pp thymidine transport in via proton symport (periplasm) GAP
TPRDCOAS triphosphoribosyl-dephospho-CoA synthase GAP
TYROXDApp Tyramine:oxygen oxidoreductase(deaminating)(flavin-containing) (periplasm) GAP
UDPGALM UDPgalactopyranose mutase GAP
UGCIAMH ureidoglycine aminohydrolase GAP
UGLYCH Ureidoglycolate hydrolase GAP
URACPAH peroxyureidoacrylate hydrolase GAP
URDGLYCD ureidoglycolate dehydrogenase GAP
URIt2pp uridine transport in via proton symport (periplasm) GAP
XAND xanthine dehydrogenase GAP
XTSNt2rpp Xanthosine transport via proton symport (periplasm) GAP
XYLUt2pp L-xylulose transport in via proton symport (periplasm) GAP