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Gene
GAP
Associated reactions
  BiGG ID Name Gene reaction rule
23DOGULNt4pp Na+/ 2,3-Dioxo-L-gulonate symport (periplasm) GAP
2DDARAA 2-dehydro-3-deoxy-D-arabinonate Aldolase GAP
__Ecoli_panGEMs__2HPTCOAT 2-hydroxycyclohepta-1,4,6-triene-1-carboxyl-CoA thioesterase GAP
3HCINNMH 3-hydroxycinnamate hydroxylase GAP
3HPPPNH 3-(3-hydroxy-phenyl)propionate hydroxylase GAP
3KGK 3-keto-L-gulonate kinase GAP
3OXCOAT 3-oxoadipyl-CoA thiolase GAP
42A12BOOXpp 4-(2-Aminoethyl)-1,2-benzenediol:oxygen oxidoreductase(deaminating)(flavin-containing) GAP
4ABZGLUH p-aminobenzoyl-glutamate hydrolase GAP
4ABZGLUtr p-aminobenzoyl glutamate:H+ symporter GAP
__Ecoli_panGEMs__AACPS1 Acyl-[acyl-carrier-protein] synthetase (n-C14:0) GAP
__Ecoli_panGEMs__AACPS2 Acyl-[acyl-carrier-protein] synthetase (n-C14:1) GAP
__Ecoli_panGEMs__AACPS3 Acyl-[acyl-carrier-protein] synthetase (n-C16:0) GAP
__Ecoli_panGEMs__AACPS4 Acyl-[acyl-carrier-protein] synthetase (n-C16:1) GAP
__Ecoli_panGEMs__AACPS5 Acyl-[acyl-carrier-protein] synthetase (n-C18:1) GAP
__Ecoli_panGEMs__AACPS6 Acyl-[acyl-carrier-protein] synthetase (n-C18:0) GAP
__Ecoli_panGEMs__AACPS7 Acyl-[acyl-carrier-protein] synthetase (n-C12:0) GAP
__Ecoli_panGEMs__AACPS8 Acyl-[acyl-carrier-protein] synthetase (n-C10:0) GAP
__Ecoli_panGEMs__AACPS9 Acyl-[acyl-carrier-protein] synthetase (n-C8:0) GAP
ACBIPGT Adenosyl cobinamide phosphate guanyltransferase GAP
__Ecoli_panGEMs__ACOAD1fr Acyl-CoA dehydrogenase (butanoyl-CoA) GAP
__Ecoli_panGEMs__ACOAD2f Acyl-CoA dehydrogenase (hexanoyl-CoA) GAP
__Ecoli_panGEMs__ACOAD3f Acyl-CoA dehydrogenase (octanoyl-CoA) GAP
__Ecoli_panGEMs__ACOAD4f Acyl-CoA dehydrogenase (decanoyl-CoA) GAP
__Ecoli_panGEMs__ACOAD5f Acyl-CoA dehydrogenase (dodecanoyl-CoA) GAP
__Ecoli_panGEMs__ACOAD6f Acyl-CoA dehydrogenase (tetradecanoyl-CoA) GAP
__Ecoli_panGEMs__ACOAD7f Acyl-CoA dehydrogenase (hexadecanoyl-CoA) GAP
__Ecoli_panGEMs__ACOAD8f Acyl-CoA dehydrogenase (octadecanoyl-CoA) GAP
__Ecoli_panGEMs__ACOATA Acetyl-CoA ACP transacylase GAP
__Ecoli_panGEMs__ACPPAT120 Acyl-(acyl carrier protein):phosphate acyltransferase (C12:0) GAP
__Ecoli_panGEMs__ACPPAT140 Acyl-(acyl carrier protein):phosphate acyltransferase (C14:0) GAP
__Ecoli_panGEMs__ACPPAT141 Acyl-(acyl carrier protein):phosphate acyltransferase (C14:1) GAP
__Ecoli_panGEMs__ACPPAT160 Acyl-(acyl carrier protein):phosphate acyltransferase (C16:0) GAP
__Ecoli_panGEMs__ACPPAT161 Acyl-(acyl carrier protein):phosphate acyltransferase (C16:1) GAP
__Ecoli_panGEMs__ACPPAT180 Acyl-(acyl carrier protein):phosphate acyltransferase (C18:0) GAP
__Ecoli_panGEMs__ACPPAT181 Acyl-(acyl carrier protein):phosphate acyltransferase (C18:1) GAP
ADNt2pp adenosine transport in via proton symport (periplasm) GAP
ADOCBIK Adenosyl cobinamide kinase GAP
ADOCBLS Adenosylcobalamin 5'-phosphate synthase GAP
AGMT agmatinase GAP
AHGDx (S)-alpha-hydroxyglutarate dehydrogenase GAP
AI2abcpp autoinducer-2 ABC transporter GAP
AI2K autoinducer-2 kinase GAP
ALAGLUE L-alanyl-gamma-glutamate epimerase GAP
ALDD19xr aldehyde dehydrogenase (phenylacetaldehyde, NAD) GAP
ALLabcpp D-allose transport via ABC system (periplasm) GAP
ALLK Allose kinase GAP
ALLTAMH2 Allantoate amidinohydrolase GAP
ALLTN allantoinase GAP
ALLTNt2rpp allantoin transport in via proton symport (periplasm) GAP
ALLULPE Allulose 6-phosphate epimerase GAP
ALR2x aldose reductase (methylglyoxal) (nadh) GAP
AMPN AMP nucleosidase GAP
AP4AS Ap4A synthetase GAP
ARGDCpp arginine decarboxylase GAP
ARGt3pp L-arginine transport out via proton antiport (cytoplasm to periplasm) GAP
ARHGDx (R)-alpha-hydroxyglutarate dehydrogenase GAP
ATPPRT ATP phosphoribosyltransferase GAP
BETALDHx betaine-aldehyde dehydrogenase GAP
BETALDHy betaine-aldehyde dehydrogenase GAP
CADVtpp Lysine/Cadaverine antiporter (periplasm) GAP
CHOLD choline dehydrogenase GAP
CSND Cytosine deaminase GAP
CSNt2pp cytosine transport in via proton symport (periplasm) GAP
CYNTAH Cyanate aminohydrolase GAP
CYNTt2pp Cyanate transport via proton symport (periplasm) GAP
CYTDK1 cytidine kinase (ATP) GAP
CYTDK2_1 cytidine kinase (GTP) GAP
CYTDt2pp cytidine transport in via proton symport (periplasm) GAP
__Ecoli_panGEMs__DAPAL 2,3-diaminopropionate amonnia lyase GAP
DCTPD dCTP deaminase GAP
DHACOAH 2,3-dehydroadipyl-CoA hydratase GAP
DHCINDO 2,3-dihydroxycinnamate 1,2-dioxygenase GAP
DHPStex 2,3-dihydroxypropane 1-sulfonate transport via diffusion GAP
DHPStr 2,3-dihydroxypropane 1-sulfonate transporter GAP
__Ecoli_panGEMs__DSBCGT DsbC:glutathione thiotransferase GAP
DXYLTD D-xylonate dehydratase GAP
__Ecoli_panGEMs__ECA4OALpp Enterobacterial common antigen (x4) O-antigen ligase (periplasm) GAP
ETHAAL Ethanolamine ammonia-lyase GAP
__Ecoli_panGEMs__FADt FAD transporter, periplasm GAP
FALDH2 formaldehyde dehydrogenase GAP
FBA3 Sedoheptulose 1,7-bisphosphate D-glyceraldehyde-3-phosphate-lyase GAP
__Ecoli_panGEMs__FE3DCITabcpp Iron transport from ferric-dicitrate via ABC system (periplasm) GAP
__Ecoli_panGEMs__FE3DCITtonex Ferric-dicitrate transport via ton system (extracellular) GAP
__Ecoli_panGEMs__FMNt FMN transporter, periplasm GAP
THFAT Aminomethyltransferase GAP
FUCtpp L-fucose transport via proton symport (periplasm) GAP
__Ecoli_panGEMs__G3PAT120 Glycerol-3-phosphate acyltransferase (C12:0) GAP
__Ecoli_panGEMs__G3PAT140 Glycerol-3-phosphate acyltransferase (C14:0) GAP
__Ecoli_panGEMs__G3PAT141 Glycerol-3-phosphate acyltransferase (C14:1) GAP
__Ecoli_panGEMs__G3PAT160 Glycerol-3-phosphate acyltransferase (C16:0) GAP
__Ecoli_panGEMs__G3PAT161 Glycerol-3-phosphate acyltransferase (C16:1) GAP
__Ecoli_panGEMs__G3PAT180 Glycerol-3-phosphate acyltransferase (C18:0) GAP
__Ecoli_panGEMs__G3PAT181 Glycerol-3-phosphate acyltransferase (C18:1) GAP
G5SD glutamate-5-semialdehyde dehydrogenase GAP
GAL1PPpp D-galactose 1-phosphatase GAP
__Ecoli_panGEMs__GALT1 Galactosyltransferase I (LPS core synthesis) GAP
GALt2pp D-galactose transport in via proton symport (periplasm) GAP
GALTptspp Galactitol transport via PEP:Pyr PTS (periplasm) GAP
GCALDD Glycolaldehyde dehydrogenase GAP
__Ecoli_panGEMs__GDMANE GDP-4-dehydro-6-deoxy-D-mannose epimerase GAP
GDPMNH GDP-mannose mannosyl hydrolase GAP
GLCt2pp D-glucose transport in via proton symport (periplasm) GAP
__Ecoli_panGEMs__GLCTR2 Glucosyltransferase II (LPS core synthesis) GAP
__Ecoli_panGEMs__GLCTR3 Glucosyltransferase III (LPS core synthesis) GAP
GLU5K glutamate 5-kinase GAP
GLYCK glycerate kinase GAP
GLYCL Glycine Cleavage System GAP
__Ecoli_panGEMs__GMAND GDP-D-mannose dehydratase GAP
GND phosphogluconate dehydrogenase GAP
GOFUCR GDP-4-oxo-L-fucose reductase GAP
GTHS glutathione synthetase GAP
GUAD_1 guanine deaminase GAP
HADPCOADH3 3-hydroxyadipyl-CoA dehydrogenase (NAD+) GAP
HCINNMt2rpp 3-hydroxycinnamic acid transport via proton symport, reversible (periplasm) GAP
HCYSMT homocysteine S-methyltransferase GAP
HCYSMT2 Homocysteine Methyltransferase GAP
__Ecoli_panGEMs__HEPK2 LPS heptose kinase II (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPT4 Heptosyltransferase IV (LPS core synthesis) GAP
HISTD histidinol dehydrogenase GAP
HISTP_1 histidinol-phosphatase GAP
HKNDDH 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase GAP
HKNTDH_1 2-hydroxy-6-ketononotrienedioate hydrolase GAP
HOPNTAL 4-hydroxy-2-oxopentanoate aldolase GAP
HPACOAT hydroxyphenylacetyl-CoA thioesterase GAP
HPPPNDO 2,3-dihydroxypheylpropionate 1,2-dioxygenase GAP
HPPPNt2rpp 3-(3-hydroxyphenyl)propionate transport via proton symport, reversible (periplasm) GAP
HSTPT histidinol-phosphate transaminase GAP
HXAND hypoxanthine dehydrogenase GAP
IG3PS Imidazole-glycerol-3-phosphate synthase GAP
IGPDH imidazoleglycerol-phosphate dehydratase GAP
IPDDI isopentenyl-diphosphate D-isomerase GAP
LACZ b-galactosidase GAP
__Ecoli_panGEMs__LADGMDH L-alanyl-gamma-D-glutamyl-meso-diaminopimelate hydrolase GAP
LALGP L-alanyl-gamma-L-glutamate peptidase GAP
LCADi lactaldehyde dehydrogenase GAP
LCARSyi lacaldehyde reductase (S-propane-1,2-diol forming) GAP
LCTStpp Lactose transport via proton symport (periplasm) GAP
LDH_D D-lactate dehydrogenase GAP
MAN1PT2 mannose-1-phosphate guanylyltransferase (GDP) GAP
MCITD 2-methylcitrate dehydratase GAP
MCITL2 methylisocitrate lyase GAP
MCITS 2-methylcitrate synthase GAP
__Ecoli_panGEMs__MCOATA Malonyl-CoA-ACP transacylase GAP
MEPNabcpp methylpshophonic acid abc transporter GAP
METAT methionine adenosyltransferase GAP
MMCD Methylmalonyl-CoA decarboxylase GAP
MMETt2pp S-methylmethionine permease (periplasm) GAP
MMM Methylmalonyl-CoA mutase GAP
__Ecoli_panGEMs__MOAT3C 3-deoxy-D-manno-octulosonic acid transferase III (LPS core biosynthesis) GAP
__Ecoli_panGEMs__MOCDS Molybdopterin cytidine dinucleotide synthase GAP
NNDMBRT Nicotinate-nucleotide dimethylbenzimidazole phosphoribosyltransferase GAP
NTPP10 Nucleoside triphosphate pyrophosphorylase (ditp) GAP
NTPP11_1 Nucleoside triphosphate pyrophosphorylase (xtp) GAP
NTPP9_1 Nucleoside triphosphate pyrophosphorylase (itp) GAP
__Ecoli_panGEMs__O16A4Lpp O16 anitgen (x4) ligase (periplasm) GAP
__Ecoli_panGEMs__O16AP1pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP2pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP3pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AT Rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate O-acetyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AUNDtpp O16 antigen (flippase, cytoplasm to periplasm) GAP
__Ecoli_panGEMs__O16GALFT Galactofuranosyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16GLCT1 Glucosyltransferase I (LPS O16 antigen biosynthesis) GAP
OMPHHXy 2-octaprenyl-6-methoxyphenol hydroxylase (NADPH) GAP
OP4ENH 2-oxopent-4-enoate hydratase GAP
OPHHXy 2-Octaprenylphenol hydroxylase (NADPH) GAP
OXCOAHDH oxepin-CoA hydrolase/ 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase (NADP+) GAP
OXDHCOAT 3-oxo-5,6-dehydrosuberyl-CoA thiolase GAP
PACCOAE ring 1,2-phenylacetyl-CoA epoxidase (NADPH) GAP
PACCOAL phenylacetate-CoA ligase GAP
PACOAT phenylacetyl-CoA thioesterase GAP
__Ecoli_panGEMs__PAI2T 3-hydroxy-2,4-pentadione 5-phosphate thiolase GAP
PEAMNOpp Phenethylamine oxidase GAP
PGCD phosphoglycerate dehydrogenase GAP
PGK phosphoglycerate kinase GAP
PGL 6-phosphogluconolactonase GAP
PHDA phenylhydantoinase GAP
PMANM phosphomannomutase GAP
__Ecoli_panGEMs__POR5 Pyruvate synthase GAP
PPCSCT Propanoyl-CoA: succinate CoA-transferase GAP
PPDOy Propane-1,2-diol:NADP+ 1-oxidoreductase GAP
PRAMPC_1 phosphoribosyl-AMP cyclohydrolase GAP
PRATPP phosphoribosyl-ATP pyrophosphatase GAP
PRMICI 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase GAP
__Ecoli_panGEMs__PUACGAMS Poly-?-1,6-N-acetyl-D-glucosamine synthase GAP
__Ecoli_panGEMs__PUACGAMtr Transport of poly-?-1,6-N-acetyl-D-glucosamine (poly-?-1,6-N-acetyl-D-glucosamine synthase) GAP
PUNP7 purine-nucleoside phosphorylase (Xanthosine) GAP
REPHACCOAI ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming) GAP
__Ecoli_panGEMs__RHAT1 Rhamnosyltransferase I (LPS core biosynthesis) GAP
S7PI sedoheptulose 7-phosphate isomerase GAP
SERtpp L-serine export via facilitated transport GAP
SKMt2pp shikimate transport in via proton symport (periplasm) GAP
SQGH sulfoquinovosidase GAP
SQtex sulphoquinovose transport via diffusion GAP
SQtr sulfoquinovose transporter GAP
TDPDRE dTDP-4-dehydrorhamnose 3,5-epimerase GAP
TDPDRR dTDP-4-dehydrorhamnose reductase GAP
__Ecoli_panGEMs__TDSR1 Thiol:disulfide reductase (DsbC) GAP
TEO2M tellurite methyltransferase GAP
THMDt2pp thymidine transport in via proton symport (periplasm) GAP
TYROXDApp Tyramine:oxygen oxidoreductase(deaminating)(flavin-containing) (periplasm) GAP
__Ecoli_panGEMs__UAGAAT UDP-N-acetylglucosamine acyltransferase GAP
UDPGALM UDPgalactopyranose mutase GAP
UDPGD UDPglucose 6-dehydrogenase GAP
UDPGPT undecaprenyl-phosphate glucose phosphotransferase GAP
UGCIAMH ureidoglycine aminohydrolase GAP
URATEtpp uric acid transporter GAP
URDGLYCD ureidoglycolate dehydrogenase GAP
URIK1_1 uridine kinase (ATP:Uridine) GAP
URIK2 uridine kinase (GTP:Uridine) GAP
URIt2pp uridine transport in via proton symport (periplasm) GAP
XAND xanthine dehydrogenase GAP
XPPT xanthine phosphoribosyltransferase GAP
XTSNt2rpp Xanthosine transport via proton symport (periplasm) GAP
XYLUt2pp L-xylulose transport in via proton symport (periplasm) GAP