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Gene
GAP
Associated reactions
  BiGG ID Name Gene reaction rule
2DDARAA 2-dehydro-3-deoxy-D-arabinonate Aldolase GAP
__Ecoli_panGEMs__3OAS121 3-oxoacyl-[acyl-carrier-protein] synthase (n-C12:1) GAP
__Ecoli_panGEMs__3OAS141 3-oxoacyl-[acyl-carrier-protein] synthase (n-C14:1) GAP
__Ecoli_panGEMs__3OAS161 3-oxoacyl-[acyl-carrier-protein] synthase (n-C16:1) GAP
__Ecoli_panGEMs__4PCPpp Tetrapeptide L,D-carboxypeptidase (periplasm) GAP
5DGLCNR 5-dehydro-D-gluconate reductase GAP
5DGLCNt2rpp 5-Dehydro-D-gluconate transport via proton symport, reversible (periplasm) GAP
__Ecoli_panGEMs__AAMYL Alpha-amylase GAP
ACACt2pp acetoacetate transport via proton symport (periplasm) GAP
ACCOAC acetyl-CoA carboxylase GAP
__Ecoli_panGEMs__AGM4PCPpp N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide L,D-carboxypeptidase (periplasmic) GAP
ARBabcpp L-arabinose transport via ABC system (periplasm) GAP
ATPPRT ATP phosphoribosyltransferase GAP
BUTCT Acetyl-CoA:butyrate-CoA transferase GAP
BUTt2rpp Butyrate transport via proton symport, reversible (periplasm) GAP
CHLabcpp choline transport via ABC system (periplasm) GAP
CHORS chorismate synthase GAP
__Ecoli_panGEMs__COLIPAKpp Lipid A core kinase (periplasm) GAP
CXSAMS carboxy-S-adenosyl-L-methionine synthase GAP
CYSabcpp L-cysteine uptake via ABC system (periplasm) GAP
CYSDDS D-cysteine desulfhydrase GAP
CYTD cytidine deaminase GAP
CYTDK1 cytidine kinase (ATP) GAP
CYTDK2_1 cytidine kinase (GTP) GAP
__Ecoli_panGEMs__DAPAL 2,3-diaminopropionate amonnia lyase GAP
DCTPD dCTP deaminase GAP
DCYTD deoxycytidine deaminase GAP
DDCAtexi Fatty acid (dodecanoate) transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
DHFS dihydrofolate synthase GAP
DHNCOAS 1,4-dihydroxy-2-napthoyl-CoA synthase GAP
DHPTPE dihydroneopterin triphosphate 2'-epimerase GAP
DMQMT 3-Dimethylubiquinonol 3-methyltransferase GAP
DMSOR1pp Dimethyl sulfoxide reductase (Menaquinol 8) (periplasm) GAP
DMSOR2pp Dimethyl sulfoxide reductase (Demethylmenaquinol 8) (periplasm) GAP
DURADx dihydrouracil dehydrogenase (NAD) GAP
DXYLTD D-xylonate dehydratase GAP
__Ecoli_panGEMs__ECA4OALpp Enterobacterial common antigen (x4) O-antigen ligase (periplasm) GAP
FRUK fructose-1-phosphate kinase GAP
FRUptspp D-fructose transport via PEP:Pyr PTS (periplasm) GAP
FRUURt2rpp D-fructuronate transport via proton symport, reversible (periplasm) GAP
G3PD6 glycerol-3-phosphate dehydrogenase (menaquinone-8) GAP
G3PD7 glycerol-3-phosphate dehydrogenase (demethylmenaquinone-8) GAP
GALTptspp Galactitol transport via PEP:Pyr PTS (periplasm) GAP
__Ecoli_panGEMs__GDMANE GDP-4-dehydro-6-deoxy-D-mannose epimerase GAP
GDPMNH GDP-mannose mannosyl hydrolase GAP
GLCabcpp D-glucose transport via ABC system (periplasm) GAP
GLTPD Galactitol-1-phosphate dehydrogenase GAP
GLUPRT glutamine phosphoribosyldiphosphate amidotransferase GAP
GLYC3Pt6pp Glycerol-3-phosphate : phosphate antiporter (periplasm) GAP
GLYCTO2 Glycolate oxidase GAP
GLYCTO3 Glycolate oxidase GAP
GLYCTO4 Glycolate oxidase GAP
__Ecoli_panGEMs__GMAND GDP-D-mannose dehydratase GAP
GND phosphogluconate dehydrogenase GAP
GOFUCR GDP-4-oxo-L-fucose reductase GAP
GPDDA1pp Glycerophosphodiester phosphodiesterase (Glycerophosphocholine) GAP
GPDDA2pp Glycerophosphodiester phosphodiesterase (Glycerophosphoethanolamine) GAP
GPDDA3pp Glycerophosphodiester phosphodiesterase (Glycerophosphoserine) GAP
GPDDA4pp Glycerophosphodiester phosphodiesterase (Glycerophosphoglycerol) GAP
GPDDA5pp Glycerophosphodiester phosphodiesterase (Glycerophosphoinositol) GAP
GTPCI GTP cyclohydrolase I GAP
HCYSMT homocysteine S-methyltransferase GAP
HCYSMT2 Homocysteine Methyltransferase GAP
HDCAtexi Hexadecanoate transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
HDCEAtexi Hexadecenoate transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
__Ecoli_panGEMs__HEPT4 Heptosyltransferase IV (LPS core synthesis) GAP
HETZK_1 hydroxyethylthiazole kinase GAP
HEXt2rpp hexanoate transport via proton symport, reversible (periplasm) GAP
HISabcpp L-histidine transport via ABC system (periplasm) GAP
HISTD histidinol dehydrogenase GAP
HISTP_1 histidinol-phosphatase GAP
HSTPT histidinol-phosphate transaminase GAP
HXAND hypoxanthine dehydrogenase GAP
HXCT Acetyl-CoA:hexanoate-CoA transferase GAP
ICHORS isochorismate synthase GAP
IDOND L-idonate 5-dehydrogenase GAP
IDOND2 L-indonate 5-dehydrogenase (NADP) GAP
IDONt2rpp L-idonate transport via proton symport, reversible (periplasm) GAP
IG3PS Imidazole-glycerol-3-phosphate synthase GAP
IGPDH imidazoleglycerol-phosphate dehydratase GAP
__Ecoli_panGEMs__LA4NTpp 4-amino-4-deoxy-L-arabinotransferase (LPS lipid A modification, periplasmic face of membrane)) GAP
LACZpp b-galactosidase GAP
LDH_D2 D-lactate dehydrogenase GAP
LKDRA 2-keto-3-deoxy-L-rhamnonate aldolase GAP
LYSabcpp L-lysine transport via ABC system (periplasm) GAP
LYSt2pp L-lysine transport in via proton symport (periplasm) GAP
__Ecoli_panGEMs__MACPD Malonyl-ACP decarboxylase GAP
MAN1PT2 mannose-1-phosphate guanylyltransferase (GDP) GAP
MDH2 Malate dehydrogenase (ubiquinone 8 as acceptor) GAP
MDH3 Malate dehydrogenase (menaquinone 8 as acceptor) GAP
MEPNabcpp methylpshophonic acid abc transporter GAP
__Ecoli_panGEMs__MLDEP1pp Murein L,D-endopeptidase (murein3px3p) (periplasm) GAP
__Ecoli_panGEMs__MLDEP2pp Murein L,D-endopeptidase (murein5px3p) (periplasm) GAP
MMETt2pp S-methylmethionine permease (periplasm) GAP
NADH17pp NADH dehydrogenase (menaquinone-8 & 3 protons) (periplasm) GAP
NADH18pp NADH dehydrogenase (demethylmenaquinone-8 & 3 protons) (periplasm) GAP
__Ecoli_panGEMs__NO3R1bpp Nitrate reductase (Ubiquinol-8) GAP
__Ecoli_panGEMs__NO3R2bpp Nitrate reductase (Menaquinol-8) (periplasm) GAP
__Ecoli_panGEMs__O16A4Lpp O16 anitgen (x4) ligase (periplasm) GAP
__Ecoli_panGEMs__O16AP1pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP2pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP3pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AT Rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate O-acetyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AUNDtpp O16 antigen (flippase, cytoplasm to periplasm) GAP
__Ecoli_panGEMs__O16GALFT Galactofuranosyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16GLCT1 Glucosyltransferase I (LPS O16 antigen biosynthesis) GAP
OCDCAtexi Octadecanoate transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
OCDCEAtexi Octadecenoate (n-C18:1) transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
OHPHM 2-octaprenyl-6-hydroxyphenol methylase GAP
__Ecoli_panGEMs__OPMEACPS 3-Oxo-pimeloyl-[ACP] methyl ester synthase GAP
ORNabcpp ornithine transport via ABC system (periplasm) GAP
PERD Erythronate 4-phosphate (4per) dehydrogenase GAP
__Ecoli_panGEMs__PGSA120 Phosphatidylglycerol synthase (n-C12:0) GAP
__Ecoli_panGEMs__PGSA140 Phosphatidylglycerol synthase (n-C14:0) GAP
__Ecoli_panGEMs__PGSA141 Phosphatidylglycerol synthase (n-C14:1) GAP
__Ecoli_panGEMs__PGSA160 Phosphatidylglycerol synthase (n-C16:0) GAP
__Ecoli_panGEMs__PGSA161 Phosphatidylglycerol synthase (n-C16:1) GAP
__Ecoli_panGEMs__PGSA180 Phosphatidylglycerol synthase (n-C18:0) GAP
__Ecoli_panGEMs__PGSA181 Phosphatidylglycerol synthase (n-C18:1) GAP
PHDA phenylhydantoinase GAP
PHEMEabcpp protoheme transport via ABC system (periplasm) GAP
PMANM phosphomannomutase GAP
PMPK phosphomethylpyrimidine kinase GAP
PRAMPC_1 phosphoribosyl-AMP cyclohydrolase GAP
PRATPP phosphoribosyl-ATP pyrophosphatase GAP
PRMICI 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase GAP
PSURIK pseudouridine kinase GAP
PSURItpp pseudouridine transport via permease GAP
PTA2 Phosphate acetyltransferase GAP
__Ecoli_panGEMs__RHAT1 Rhamnosyltransferase I (LPS core biosynthesis) GAP
RHMND L-rhamnonate dehydratase GAP
__Ecoli_panGEMs__RNDR1 Ribonucleoside-diphosphate reductase (ADP) GAP
__Ecoli_panGEMs__RNDR2 Ribonucleoside-diphosphate reductase (GDP) GAP
__Ecoli_panGEMs__RNDR3 Ribonucleoside-diphosphate reductase (CDP) GAP
__Ecoli_panGEMs__RNDR4 Ribonucleoside-diphosphate reductase (UDP) GAP
RU5PP Ribulose-5-Phosphate Phosphatase GAP
SEPHCHCS 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase GAP
SHCHCS3 2-succinyl-6-hydroxy-2,4-cyclohexadiene 1-carboxylate synthase GAP
SUCBZL o-succinylbenzoate-CoA ligase GAP
SUCBZS O-succinylbenzoate-CoA synthase GAP
TDPDRE dTDP-4-dehydrorhamnose 3,5-epimerase GAP
TDPDRR dTDP-4-dehydrorhamnose reductase GAP
TRE6PP trehalose-phosphatase GAP
TRE6PS alpha,alpha-trehalose-phosphate synthase (UDP-forming) GAP
TTDCAtexi Tetradecanoate transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
TTDCEAtexi Tetradecenoate transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
UDPGALM UDPgalactopyranose mutase GAP
UDPGD UDPglucose 6-dehydrogenase GAP
UDPGDC UDP-glucuronate C-4'' decarboxylase GAP
UDPGPT undecaprenyl-phosphate glucose phosphotransferase GAP
UDPKAAT UDP-4''-ketopentose:UDP-4-amino-4-deoxy-L-arabinose aminotransferase GAP
ULA4NFT UDP-L-Ara4N formyltransferase GAP
__Ecoli_panGEMs__ULA4Ntppi Transport (cytoplasm to periplasm) GAP
__Ecoli_panGEMs__UPLA4FNF Undecaprenyl phosphate-L-Ara4FN formylase GAP
__Ecoli_panGEMs__UPLA4FNT Undecaprenyl phosphate-L-Ara4FN transferase GAP
URIK1_1 uridine kinase (ATP:Uridine) GAP
URIK2 uridine kinase (GTP:Uridine) GAP
XAND xanthine dehydrogenase GAP
YUMPS yUMP synthetase GAP