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Gene
GAP
Associated reactions
  BiGG ID Name Gene reaction rule
3AMACHYD 3-aminoacrylate hydrolase GAP
3HPADHi 3-Hydroxypropanal Dehydrogenase GAP
__Ecoli_panGEMs__3OAR100 3-oxoacyl-[acyl-carrier-protein] reductase (n-C10:0) GAP
__Ecoli_panGEMs__3OAR120 3-oxoacyl-[acyl-carrier-protein] reductase (n-C12:0) GAP
__Ecoli_panGEMs__3OAR121 3-oxoacyl-[acyl-carrier-protein] reductase (n-C12:1) GAP
__Ecoli_panGEMs__3OAR140 3-oxoacyl-[acyl-carrier-protein] reductase (n-C14:0) GAP
__Ecoli_panGEMs__3OAR141 3-oxoacyl-[acyl-carrier-protein] reductase (n-C14:1) GAP
__Ecoli_panGEMs__3OAR160 3-oxoacyl-[acyl-carrier-protein] reductase (n-C16:0) GAP
__Ecoli_panGEMs__3OAR161 3-oxoacyl-[acyl-carrier-protein] reductase (n-C16:1) GAP
__Ecoli_panGEMs__3OAR180 3-oxoacyl-[acyl-carrier-protein] reductase (n-C18:0) GAP
__Ecoli_panGEMs__3OAR181 3-oxoacyl-[acyl-carrier-protein] reductase (n-C18:1) GAP
__Ecoli_panGEMs__3OAR40 3-oxoacyl-[acyl-carrier-protein] reductase (n-C4:0) GAP
__Ecoli_panGEMs__3OAR60 3-oxoacyl-[acyl-carrier-protein] reductase (n-C6:0) GAP
__Ecoli_panGEMs__3OAR80 3-oxoacyl-[acyl-carrier-protein] reductase (n-C8:0) GAP
3OXCOAT 3-oxoadipyl-CoA thiolase GAP
3SLAR 3-sulfolactaldehyde reductase GAP
4HTHRA 4-hydroxy-L-threonine aldolase GAP
4HTHRK 4-Hydroxy-L-threonine kinase GAP
__Ecoli_panGEMs__AACPS1 Acyl-[acyl-carrier-protein] synthetase (n-C14:0) GAP
__Ecoli_panGEMs__AACPS2 Acyl-[acyl-carrier-protein] synthetase (n-C14:1) GAP
__Ecoli_panGEMs__AACPS3 Acyl-[acyl-carrier-protein] synthetase (n-C16:0) GAP
__Ecoli_panGEMs__AACPS4 Acyl-[acyl-carrier-protein] synthetase (n-C16:1) GAP
__Ecoli_panGEMs__AACPS5 Acyl-[acyl-carrier-protein] synthetase (n-C18:1) GAP
__Ecoli_panGEMs__AACPS6 Acyl-[acyl-carrier-protein] synthetase (n-C18:0) GAP
__Ecoli_panGEMs__AACPS7 Acyl-[acyl-carrier-protein] synthetase (n-C12:0) GAP
__Ecoli_panGEMs__AACPS8 Acyl-[acyl-carrier-protein] synthetase (n-C10:0) GAP
__Ecoli_panGEMs__AACPS9 Acyl-[acyl-carrier-protein] synthetase (n-C8:0) GAP
ABTA 4-aminobutyrate transaminase GAP
ACGK acetylglutamate kinase GAP
__Ecoli_panGEMs__ACMUMptspp N-acetylmuramate transport via PEP:Pyr PTS (periplasm) GAP
__Ecoli_panGEMs__ACOATA Acetyl-CoA ACP transacylase GAP
__Ecoli_panGEMs__ACPPAT120 Acyl-(acyl carrier protein):phosphate acyltransferase (C12:0) GAP
__Ecoli_panGEMs__ACPPAT140 Acyl-(acyl carrier protein):phosphate acyltransferase (C14:0) GAP
__Ecoli_panGEMs__ACPPAT141 Acyl-(acyl carrier protein):phosphate acyltransferase (C14:1) GAP
__Ecoli_panGEMs__ACPPAT160 Acyl-(acyl carrier protein):phosphate acyltransferase (C16:0) GAP
__Ecoli_panGEMs__ACPPAT161 Acyl-(acyl carrier protein):phosphate acyltransferase (C16:1) GAP
__Ecoli_panGEMs__ACPPAT180 Acyl-(acyl carrier protein):phosphate acyltransferase (C18:0) GAP
__Ecoli_panGEMs__ACPPAT181 Acyl-(acyl carrier protein):phosphate acyltransferase (C18:1) GAP
ACS acetyl-CoA synthetase GAP
ADD adenine deaminase GAP
ADOCBLabcpp Adenosylcobalamin transport via ABC system (periplasm) GAP
AGt3 silver transport out via proton antiport GAP
AICART phosphoribosylaminoimidazolecarboxamide formyltransferase GAP
ALLabcpp D-allose transport via ABC system (periplasm) GAP
ALLK Allose kinase GAP
ALLPI Allose 6-phosphate isomerase GAP
ALLULPE Allulose 6-phosphate epimerase GAP
AMANAPEr N-acetylmannosamine 6-phosphate epimerase GAP
AMANK N-acetyl-D-mannosamine kinase GAP
__Ecoli_panGEMs__ARBTNabcpp Aerobactin transport via ABC system (periplasm) GAP
ARBTptspp arbutin transport via PEP:Pyr PTS (periplasm) GAP
ARGSL argininosuccinate lyase GAP
AST Arginine succinyltransferase GAP
BETALDHx betaine-aldehyde dehydrogenase GAP
BETALDHy betaine-aldehyde dehydrogenase GAP
__Ecoli_panGEMs__BMOCOS Bis-molybdenum cofactor synthase GAP
BPNT 3',5'-bisphosphate nucleotidase GAP
__Ecoli_panGEMs__BWCOS Tungsten bispterin cofactor synthase GAP
CBIuabcpp Cobinamide transport via ABC system (uptake, periplasm) GAP
CBL1abcpp Cob(1)alamin transport via ABC system (periplasm) GAP
CBPS carbamoyl-phosphate synthase (glutamine-hydrolysing) GAP
CD2abcpp Cadmium (Cd+2) ABC transporter (periplasm) GAP
CGLYabcpp L-Cysteinylglycine (Cys-Gly) transport via ABC system (periplasm) GAP
CHLabcpp choline transport via ABC system (periplasm) GAP
CHOLATEtpp cholate transport via proton antiport GAP
CITL Citrate lyase GAP
COBALT2abcpp Cobalt (Co+2) ABC transporter (periplasm) GAP
__Ecoli_panGEMs__CPGNabcpp Coprogen transport via ABC system (periplasm) GAP
CU2abcpp Copper (Cu+2) ABC transporter (periplasm) GAP
CUt3 copper transport out via proton antiport GAP
CYSabc2pp L-cysteine export via ABC system (cytoplasm to periplasm) GAP
CYSabcpp L-cysteine uptake via ABC system (periplasm) GAP
__Ecoli_panGEMs__DAAD D-Amino acid dehydrogenase GAP
DAPE diaminopimelate epimerase GAP
DCTPD dCTP deaminase GAP
DDCAtexi Fatty acid (dodecanoate) transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
DDGALK 2-dehydro-3-deoxygalactonokinase GAP
DDPGALA 2-dehydro-3-deoxy-6-phosphogalactonate aldolase GAP
DHAD1 dihydroxy-acid dehydratase (2,3-dihydroxy-3-methylbutanoate) GAP
DHAD2 Dihydroxy-acid dehydratase (2,3-dihydroxy-3-methylpentanoate) GAP
__Ecoli_panGEMs__DHBSZ3FEabcpp 23dhbsz3 Fe III transport via ABC system periplasm GAP
DRPA deoxyribose-phosphate aldolase GAP
__Ecoli_panGEMs__ECA4OALpp Enterobacterial common antigen (x4) O-antigen ligase (periplasm) GAP
F6Pt6_2pp Fructose-6-phosphate transport via phosphate antiport (periplasm) GAP
__Ecoli_panGEMs__FADRx2 FAD reductase GAP
__Ecoli_panGEMs__FDMO FMNH2-dependent monooxygenase GAP
__Ecoli_panGEMs__FDMO2 FMNH2-dependent monooxygenase (methanesulfonate) GAP
__Ecoli_panGEMs__FDMO3 FMNH2-dependent monooxygenase (ethanesulfonate) GAP
__Ecoli_panGEMs__FDMO4 FMNH2-dependent monooxygenase (butanesulfonate) GAP
__Ecoli_panGEMs__FDMO6 FMNH2-dependent monooxygenase (sulfoacetate) GAP
__Ecoli_panGEMs__FE3DCITabcpp Iron transport from ferric-dicitrate via ABC system (periplasm) GAP
__Ecoli_panGEMs__FE3HOXabcpp Ferric-dicitrate transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__FE3HOXtonex Fe(III)hydroxamine transport via ton system (extracellular) GAP
__Ecoli_panGEMs__FECRMabcpp Ferrichrome transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__FECRMtonex Ferrichrome transport via ton system (extracellular) GAP
__Ecoli_panGEMs__FEENTERabcpp Fe-enterobactin transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__FEOXAMabcpp Ferroxamine transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__FEOXAMtonex Ferroxamine transport via ton system (extracellular) GAP
FHL Formate-hydrogen lyase GAP
FRULYSDG Fructoselysine phosphate deglycase GAP
FRULYSE fructoselysine 3-epimerase GAP
FRULYSK Fructoselysine Kinase GAP
FRULYSt2pp Fructoselysine transport via proton symport (periplasm) GAP
__Ecoli_panGEMs__G3PAT120 Glycerol-3-phosphate acyltransferase (C12:0) GAP
__Ecoli_panGEMs__G3PAT140 Glycerol-3-phosphate acyltransferase (C14:0) GAP
__Ecoli_panGEMs__G3PAT141 Glycerol-3-phosphate acyltransferase (C14:1) GAP
__Ecoli_panGEMs__G3PAT160 Glycerol-3-phosphate acyltransferase (C16:0) GAP
__Ecoli_panGEMs__G3PAT161 Glycerol-3-phosphate acyltransferase (C16:1) GAP
__Ecoli_panGEMs__G3PAT180 Glycerol-3-phosphate acyltransferase (C18:0) GAP
__Ecoli_panGEMs__G3PAT181 Glycerol-3-phosphate acyltransferase (C18:1) GAP
G6Pt6_2pp Glucose-6-phosphate transport via phosphate antiport (periplasm) GAP
__Ecoli_panGEMs__GALT1 Galactosyltransferase I (LPS core synthesis) GAP
GALTptspp Galactitol transport via PEP:Pyr PTS (periplasm) GAP
GAM6Pt6_2pp D-Glucosamine 6-phosphate transport via phosphate antiport (periplasm) GAP
GDPTPDP guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase GAP
GGGABADr gamma-glutamyl-gamma aminobutyric acid dehydrogenase GAP
GGPTRCO gamma glutamyl putrescine oxidase GAP
__Ecoli_panGEMs__GHBDHx Gamma-hydroxybutyrate dehydrogenase (NADH) GAP
__Ecoli_panGEMs__GLCS1 Glycogen synthase (ADPGlc) GAP
__Ecoli_panGEMs__GLCTR2 Glucosyltransferase II (LPS core synthesis) GAP
__Ecoli_panGEMs__GLCTR3 Glucosyltransferase III (LPS core synthesis) GAP
GLUSy glutamate synthase (NADPH) GAP
GLXCL glyoxalate carboligase GAP
GLYCK glycerate kinase GAP
GTHRDabc2pp glutathione export via ABC system (cytoplasm to periplasm) GAP
GTHS glutathione synthetase GAP
HADPCOADH3 3-hydroxyadipyl-CoA dehydrogenase (NAD+) GAP
HCYSMT homocysteine S-methyltransferase GAP
HCYSMT2 Homocysteine Methyltransferase GAP
HDCAtexi Hexadecanoate transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
HDCEAtexi Hexadecenoate transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
__Ecoli_panGEMs__HEPK2 LPS heptose kinase II (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPT4 Heptosyltransferase IV (LPS core synthesis) GAP
HG2abcpp Mercury (Hg+2) ABC transporter (periplasm) GAP
HISTD histidinol dehydrogenase GAP
HOPNTAL 4-hydroxy-2-oxopentanoate aldolase GAP
HSK homoserine kinase GAP
ICHORS isochorismate synthase GAP
IMPC IMP cyclohydrolase GAP
IPPMIa 3-isopropylmalate dehydratase GAP
IPPMIb 2-isopropylmalate hydratase GAP
Kabcpp Potassium ABC transporter (periplasm) GAP
KDOPS 3-deoxy -D-manno-octulosonic -acid 8-phosphate synthase GAP
LACZ b-galactosidase GAP
__Ecoli_panGEMs__LIPAMPL Lipoyl-adenylate protein ligase GAP
__Ecoli_panGEMs__LIPATPT Lipoate-ATP adenylate transferase GAP
MAN6Pt6_2pp Mannose-6-phosphate transport via phosphate antiport (periplasm) GAP
MANGLYCptspp 2-O-alpha-mannosyl-D-glycerate transport via PEP:Pyr PTS (periplasm) GAP
MANPGH 2-O-alpha-mannosyl-6-phosphate-D-glycerate hydrolase GAP
__Ecoli_panGEMs__MCOATA Malonyl-CoA-ACP transacylase GAP
MDH2 Malate dehydrogenase (ubiquinone 8 as acceptor) GAP
MDH3 Malate dehydrogenase (menaquinone 8 as acceptor) GAP
MEPNabcpp methylpshophonic acid abc transporter GAP
MMETt2pp S-methylmethionine permease (periplasm) GAP
MMM Methylmalonyl-CoA mutase GAP
__Ecoli_panGEMs__MOAT3C 3-deoxy-D-manno-octulosonic acid transferase III (LPS core biosynthesis) GAP
__Ecoli_panGEMs__MOCOS Molybdenum cofactor synthase GAP
__Ecoli_panGEMs__MPTS Molybdopterin synthase GAP
NADH17pp NADH dehydrogenase (menaquinone-8 & 3 protons) (periplasm) GAP
NADH18pp NADH dehydrogenase (demethylmenaquinone-8 & 3 protons) (periplasm) GAP
NADTRHD NAD transhydrogenase GAP
NHFRBO NADH:flavorubredoxin oxidoreductase GAP
NI2abcpp Nickle (Ni+2) ABC transporter (periplasm) GAP
__Ecoli_panGEMs__NO3R1bpp Nitrate reductase (Ubiquinol-8) GAP
__Ecoli_panGEMs__NO3R2bpp Nitrate reductase (Menaquinol-8) (periplasm) GAP
__Ecoli_panGEMs__NTRIR3pp Nitrite Reductase (Ubiquinole-8, periplasm) GAP
__Ecoli_panGEMs__NTRIR4pp Nitrite Reductase (Menaquinole-8, periplasm) GAP
__Ecoli_panGEMs__O16A4Lpp O16 anitgen (x4) ligase (periplasm) GAP
__Ecoli_panGEMs__O16AP1pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP2pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP3pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AT Rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate O-acetyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AUNDtpp O16 antigen (flippase, cytoplasm to periplasm) GAP
__Ecoli_panGEMs__O16GALFT Galactofuranosyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16GLCT1 Glucosyltransferase I (LPS O16 antigen biosynthesis) GAP
OCDCAtexi Octadecanoate transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
OCDCEAtexi Octadecenoate (n-C18:1) transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
__Ecoli_panGEMs__OCTNLL Octanoate non-lipoylated apo domain ligase GAP
__Ecoli_panGEMs__OGMEACPR 3-Oxo-glutaryl-[ACP] methyl ester reductase GAP
OP4ENH 2-oxopent-4-enoate hydratase GAP
OPHHXy 2-Octaprenylphenol hydroxylase (NADPH) GAP
__Ecoli_panGEMs__OPMEACPR 3-Oxo-pimeloyl-[ACP] methyl ester reductase GAP
OXDHCOAT 3-oxo-5,6-dehydrosuberyl-CoA thiolase GAP
P5CD 1-pyrroline-5-carboxylate dehydrogenase GAP
PACCOAE ring 1,2-phenylacetyl-CoA epoxidase (NADPH) GAP
PHEMEabcpp protoheme transport via ABC system (periplasm) GAP
PHEtipp L-phenylalanine transport out (periplasm) GAP
PPAt4pp Na+/Propionate symporter (periplasm) GAP
PPC phosphoenolpyruvate carboxylase GAP
PPGPPDP guanosine-3',5'-bis(diphosphate) 3'-diphosphatase GAP
PRAGSr phosphoribosylglycinamide synthase GAP
PROD3 Proline dehydrogenase (q8) GAP
PROGLYabcpp L-Prolinylglycine (Pro-Gly) transport via ABC system (periplasm) GAP
PROt4pp Na+/Proline-L symporter (periplasm) GAP
PSCLYSt2pp psicoselysine transport via proton symport (periplasm) GAP
RBK_L1 L-ribulokinase (L-ribulose) GAP
__Ecoli_panGEMs__RHAT1 Rhamnosyltransferase I (LPS core biosynthesis) GAP
SBTptspp D-sorbitol transport via PEP:Pyr PTS (periplasm) GAP
SELabcpp selenatenate transport via ABC system (periplasm) GAP
SERASr (L-seryl)adenylate synthase GAP
SGSAD Succinylglutamic semialdehyde dehydrogenase GAP
SLNTabcpp selenite ABC transporter (periplasm) GAP
SUCBZS O-succinylbenzoate-CoA synthase GAP
SUCptspp sucrose transport via PEP:Pyr (periplasm) GAP
SULR sulfite reductase (NADPH2) GAP
TAURabcpp taurine transport via ABC system (periplasm) GAP
TDPDRE dTDP-4-dehydrorhamnose 3,5-epimerase GAP
TDPDRR dTDP-4-dehydrorhamnose reductase GAP
__Ecoli_panGEMs__THZPSN3 Thiazole phosphate synthesis GAP
TMPPP thiamine-phosphate diphosphorylase GAP
TRPtipp L-tryptophan transport out (periplasm) GAP
__Ecoli_panGEMs__TSULabcpp Thiosulfate transport via ABC system (periplasm) GAP
TTDCAtexi Tetradecanoate transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
TTDCEAtexi Tetradecenoate transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
TYRL tyrosine lyase GAP
TYRtipp L-tyrosine transport out (periplasm) GAP
__Ecoli_panGEMs__UAGAAT UDP-N-acetylglucosamine acyltransferase GAP
UDPG4E UDPglucose 4-epimerase GAP
UDPGALM UDPgalactopyranose mutase GAP
__Ecoli_panGEMs__WCOS Tungsten pterin cofactor synthase GAP
XYLt2pp D-xylose transport in via proton symport (periplasm) GAP
ZN2abcpp Zinc (Zn+2) ABC transporter, efflux (periplasm) GAP