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Gene
GAP
Associated reactions
  BiGG ID Name Gene reaction rule
2DDARAA 2-dehydro-3-deoxy-D-arabinonate Aldolase GAP
3AMACHYD 3-aminoacrylate hydrolase GAP
3HPADHi 3-Hydroxypropanal Dehydrogenase GAP
3KGK 3-keto-L-gulonate kinase GAP
3OXCOAT 3-oxoadipyl-CoA thiolase GAP
42A12BOOXpp 4-(2-Aminoethyl)-1,2-benzenediol:oxygen oxidoreductase(deaminating)(flavin-containing) GAP
4HTHRK 4-Hydroxy-L-threonine kinase GAP
5DGLCNR 5-dehydro-D-gluconate reductase GAP
5DGLCNt2rpp 5-Dehydro-D-gluconate transport via proton symport, reversible (periplasm) GAP
__Ecoli_panGEMs__AACPS1 Acyl-[acyl-carrier-protein] synthetase (n-C14:0) GAP
__Ecoli_panGEMs__AACPS2 Acyl-[acyl-carrier-protein] synthetase (n-C14:1) GAP
__Ecoli_panGEMs__AACPS3 Acyl-[acyl-carrier-protein] synthetase (n-C16:0) GAP
__Ecoli_panGEMs__AACPS4 Acyl-[acyl-carrier-protein] synthetase (n-C16:1) GAP
__Ecoli_panGEMs__AACPS5 Acyl-[acyl-carrier-protein] synthetase (n-C18:1) GAP
__Ecoli_panGEMs__AACPS6 Acyl-[acyl-carrier-protein] synthetase (n-C18:0) GAP
__Ecoli_panGEMs__AACPS7 Acyl-[acyl-carrier-protein] synthetase (n-C12:0) GAP
__Ecoli_panGEMs__AACPS8 Acyl-[acyl-carrier-protein] synthetase (n-C10:0) GAP
__Ecoli_panGEMs__AACPS9 Acyl-[acyl-carrier-protein] synthetase (n-C8:0) GAP
ABTA 4-aminobutyrate transaminase GAP
__Ecoli_panGEMs__ACMUMptspp N-acetylmuramate transport via PEP:Pyr PTS (periplasm) GAP
__Ecoli_panGEMs__ACOATA Acetyl-CoA ACP transacylase GAP
__Ecoli_panGEMs__ACPPAT120 Acyl-(acyl carrier protein):phosphate acyltransferase (C12:0) GAP
__Ecoli_panGEMs__ACPPAT140 Acyl-(acyl carrier protein):phosphate acyltransferase (C14:0) GAP
__Ecoli_panGEMs__ACPPAT141 Acyl-(acyl carrier protein):phosphate acyltransferase (C14:1) GAP
__Ecoli_panGEMs__ACPPAT160 Acyl-(acyl carrier protein):phosphate acyltransferase (C16:0) GAP
__Ecoli_panGEMs__ACPPAT161 Acyl-(acyl carrier protein):phosphate acyltransferase (C16:1) GAP
__Ecoli_panGEMs__ACPPAT180 Acyl-(acyl carrier protein):phosphate acyltransferase (C18:0) GAP
__Ecoli_panGEMs__ACPPAT181 Acyl-(acyl carrier protein):phosphate acyltransferase (C18:1) GAP
ADD adenine deaminase GAP
ADNt2pp adenosine transport in via proton symport (periplasm) GAP
ADOCBLabcpp Adenosylcobalamin transport via ABC system (periplasm) GAP
AGt3 silver transport out via proton antiport GAP
ALAabcpp L-alanine transport via ABC system (periplasm) GAP
ALDD19xr aldehyde dehydrogenase (phenylacetaldehyde, NAD) GAP
AMANK N-acetyl-D-mannosamine kinase GAP
ANS anthranilate synthase GAP
__Ecoli_panGEMs__ARBTNabcpp Aerobactin transport via ABC system (periplasm) GAP
ARMEPNS ?-D-ribose 1-methylphosphonate 5-triphosphate synthase GAP
BETALDHx betaine-aldehyde dehydrogenase GAP
BETALDHy betaine-aldehyde dehydrogenase GAP
__Ecoli_panGEMs__BMOCOS Bis-molybdenum cofactor synthase GAP
__Ecoli_panGEMs__BWCOS Tungsten bispterin cofactor synthase GAP
CBIuabcpp Cobinamide transport via ABC system (uptake, periplasm) GAP
CBL1abcpp Cob(1)alamin transport via ABC system (periplasm) GAP
CBPS carbamoyl-phosphate synthase (glutamine-hydrolysing) GAP
CGLYabcpp L-Cysteinylglycine (Cys-Gly) transport via ABC system (periplasm) GAP
CHLabcpp choline transport via ABC system (periplasm) GAP
CHLt3pp choline transport via proton antiport (periplasm) GAP
CITL Citrate lyase GAP
__Ecoli_panGEMs__CPGNabcpp Coprogen transport via ABC system (periplasm) GAP
CUt3 copper transport out via proton antiport GAP
CYSabc2pp L-cysteine export via ABC system (cytoplasm to periplasm) GAP
CYTDt2pp cytidine transport in via proton symport (periplasm) GAP
DCTPD dCTP deaminase GAP
DDGALK 2-dehydro-3-deoxygalactonokinase GAP
DDPGALA 2-dehydro-3-deoxy-6-phosphogalactonate aldolase GAP
DHACOAH 2,3-dehydroadipyl-CoA hydratase GAP
DHAD1 dihydroxy-acid dehydratase (2,3-dihydroxy-3-methylbutanoate) GAP
DHAD2 Dihydroxy-acid dehydratase (2,3-dihydroxy-3-methylpentanoate) GAP
__Ecoli_panGEMs__DHBSZ3FEabcpp 23dhbsz3 Fe III transport via ABC system periplasm GAP
DHNCOAS 1,4-dihydroxy-2-napthoyl-CoA synthase GAP
__Ecoli_panGEMs__DHNPA2r Dihydroneopterin aldolase reversible GAP
__Ecoli_panGEMs__DHNPTE Dihydroneopterin epimerase GAP
DRPA deoxyribose-phosphate aldolase GAP
DXYLK 1-Deoxy-D-xylulose kinase GAP
DXYLTD D-xylonate dehydratase GAP
__Ecoli_panGEMs__ECA4OALpp Enterobacterial common antigen (x4) O-antigen ligase (periplasm) GAP
__Ecoli_panGEMs__FADRx2 FAD reductase GAP
__Ecoli_panGEMs__FDMO FMNH2-dependent monooxygenase GAP
__Ecoli_panGEMs__FDMO2 FMNH2-dependent monooxygenase (methanesulfonate) GAP
__Ecoli_panGEMs__FDMO3 FMNH2-dependent monooxygenase (ethanesulfonate) GAP
__Ecoli_panGEMs__FDMO4 FMNH2-dependent monooxygenase (butanesulfonate) GAP
__Ecoli_panGEMs__FDMO6 FMNH2-dependent monooxygenase (sulfoacetate) GAP
__Ecoli_panGEMs__FE3DCITabcpp Iron transport from ferric-dicitrate via ABC system (periplasm) GAP
__Ecoli_panGEMs__FE3HOXabcpp Ferric-dicitrate transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__FECRMabcpp Ferrichrome transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__FEENTERabcpp Fe-enterobactin transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__FEOXAMabcpp Ferroxamine transport via ABC system (periplasm) GAP
FHL Formate-hydrogen lyase GAP
FRULYSDG Fructoselysine phosphate deglycase GAP
FRULYSE fructoselysine 3-epimerase GAP
FRULYSK Fructoselysine Kinase GAP
FRULYSt2pp Fructoselysine transport via proton symport (periplasm) GAP
FRUURt2rpp D-fructuronate transport via proton symport, reversible (periplasm) GAP
__Ecoli_panGEMs__G3PAT120 Glycerol-3-phosphate acyltransferase (C12:0) GAP
__Ecoli_panGEMs__G3PAT140 Glycerol-3-phosphate acyltransferase (C14:0) GAP
__Ecoli_panGEMs__G3PAT141 Glycerol-3-phosphate acyltransferase (C14:1) GAP
__Ecoli_panGEMs__G3PAT160 Glycerol-3-phosphate acyltransferase (C16:0) GAP
__Ecoli_panGEMs__G3PAT161 Glycerol-3-phosphate acyltransferase (C16:1) GAP
__Ecoli_panGEMs__G3PAT180 Glycerol-3-phosphate acyltransferase (C18:0) GAP
__Ecoli_panGEMs__G3PAT181 Glycerol-3-phosphate acyltransferase (C18:1) GAP
G3PCabcpp sn-glycerol-3-phosphocholine transport via ABC system (periplasm) GAP
G3PEabcpp sn-glycerol-3-phosphoethanolamine transport via ABC system (periplasm) GAP
G3PGabcpp sn-glycerol-3-phosphoglycerol transport via ABC system (periplasm) GAP
G3PIabcpp sn-glycerol-3-phosphoethanolamine transport via ABC system (periplasm) GAP
G3PSabcpp sn-glycerol-3-phosphoserine transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__GALT1 Galactosyltransferase I (LPS core synthesis) GAP
GALTptspp Galactitol transport via PEP:Pyr PTS (periplasm) GAP
GGGABADr gamma-glutamyl-gamma aminobutyric acid dehydrogenase GAP
GGPTRCO gamma glutamyl putrescine oxidase GAP
__Ecoli_panGEMs__GLCS1 Glycogen synthase (ADPGlc) GAP
__Ecoli_panGEMs__GLCTR2 Glucosyltransferase II (LPS core synthesis) GAP
__Ecoli_panGEMs__GLCTR3 Glucosyltransferase III (LPS core synthesis) GAP
GLUSy glutamate synthase (NADPH) GAP
GLXCL glyoxalate carboligase GAP
GLYBt3pp Glycine betaine transport via proton antiport (periplasm) GAP
GLYC2Pabcpp sn-Glycerol 2-phosphate transport via ABC system (periplasm) GAP
GLYC3Pabcpp sn-Glycerol 3-phosphate transport via ABC system (periplasm) GAP
GLYCK glycerate kinase GAP
GTHRDabc2pp glutathione export via ABC system (cytoplasm to periplasm) GAP
GTHS glutathione synthetase GAP
HADPCOADH3 3-hydroxyadipyl-CoA dehydrogenase (NAD+) GAP
HCYSMT homocysteine S-methyltransferase GAP
HCYSMT2 Homocysteine Methyltransferase GAP
__Ecoli_panGEMs__HEPK2 LPS heptose kinase II (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPT4 Heptosyltransferase IV (LPS core synthesis) GAP
HOPNTAL 4-hydroxy-2-oxopentanoate aldolase GAP
HPACOAT hydroxyphenylacetyl-CoA thioesterase GAP
HSK homoserine kinase GAP
HSTPT histidinol-phosphate transaminase GAP
IDOND L-idonate 5-dehydrogenase GAP
IDOND2 L-indonate 5-dehydrogenase (NADP) GAP
IDONt2rpp L-idonate transport via proton symport, reversible (periplasm) GAP
ILEabcpp L-isoleucine transport via ABC system (periplasm) GAP
Kabcpp Potassium ABC transporter (periplasm) GAP
KDOPS 3-deoxy -D-manno-octulosonic -acid 8-phosphate synthase GAP
LACZ b-galactosidase GAP
LEUabcpp L-leucine transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__LIPAMPL Lipoyl-adenylate protein ligase GAP
__Ecoli_panGEMs__LIPATPT Lipoate-ATP adenylate transferase GAP
MANGLYCptspp 2-O-alpha-mannosyl-D-glycerate transport via PEP:Pyr PTS (periplasm) GAP
MANPGH 2-O-alpha-mannosyl-6-phosphate-D-glycerate hydrolase GAP
__Ecoli_panGEMs__MCOATA Malonyl-CoA-ACP transacylase GAP
MEPNabcpp methylpshophonic acid abc transporter GAP
MMETt2pp S-methylmethionine permease (periplasm) GAP
__Ecoli_panGEMs__MOAT3C 3-deoxy-D-manno-octulosonic acid transferase III (LPS core biosynthesis) GAP
__Ecoli_panGEMs__MOCOS Molybdenum cofactor synthase GAP
NADH17pp NADH dehydrogenase (menaquinone-8 & 3 protons) (periplasm) GAP
NADH18pp NADH dehydrogenase (demethylmenaquinone-8 & 3 protons) (periplasm) GAP
NADHXD NADHX dehydratase GAP
NADHXE NADHX epimerase GAP
NADPHXD NADPHX dehydratase GAP
NADPHXE NADPHX epimerase GAP
NHFRBO NADH:flavorubredoxin oxidoreductase GAP
__Ecoli_panGEMs__O16A4Lpp O16 anitgen (x4) ligase (periplasm) GAP
__Ecoli_panGEMs__O16AP1pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP2pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP3pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AT Rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate O-acetyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AUNDtpp O16 antigen (flippase, cytoplasm to periplasm) GAP
__Ecoli_panGEMs__O16GALFT Galactofuranosyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16GLCT1 Glucosyltransferase I (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__OCTNLL Octanoate non-lipoylated apo domain ligase GAP
OMMBLHXy 2-Octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (NADPHl) GAP
OP4ENH 2-oxopent-4-enoate hydratase GAP
OXCOAHDH oxepin-CoA hydrolase/ 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase (NADP+) GAP
OXDHCOAT 3-oxo-5,6-dehydrosuberyl-CoA thiolase GAP
P5CD 1-pyrroline-5-carboxylate dehydrogenase GAP
P5CR pyrroline-5-carboxylate reductase GAP
PACCOAE ring 1,2-phenylacetyl-CoA epoxidase (NADPH) GAP
PACCOAL phenylacetate-CoA ligase GAP
PACOAT phenylacetyl-CoA thioesterase GAP
PEAMNOpp Phenethylamine oxidase GAP
PHEMEabcpp protoheme transport via ABC system (periplasm) GAP
PHEtipp L-phenylalanine transport out (periplasm) GAP
POX pyruvate oxidase GAP
PPAt4pp Na+/Propionate symporter (periplasm) GAP
PPC phosphoenolpyruvate carboxylase GAP
PROD3 Proline dehydrogenase (q8) GAP
PROGLYabcpp L-Prolinylglycine (Pro-Gly) transport via ABC system (periplasm) GAP
PROt4pp Na+/Proline-L symporter (periplasm) GAP
PSCLYSt2pp psicoselysine transport via proton symport (periplasm) GAP
PTRCORNt7pp putrescine/ornithine antiporter (periplasm) GAP
__Ecoli_panGEMs__PUACGAMS Poly-?-1,6-N-acetyl-D-glucosamine synthase GAP
__Ecoli_panGEMs__PUACGAMtr Transport of poly-?-1,6-N-acetyl-D-glucosamine (poly-?-1,6-N-acetyl-D-glucosamine synthase) GAP
PUNP7 purine-nucleoside phosphorylase (Xanthosine) GAP
R15BPK ribose-1,5-bisphosphokinase GAP
REPHACCOAI ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming) GAP
__Ecoli_panGEMs__RHAT1 Rhamnosyltransferase I (LPS core biosynthesis) GAP
RHMND L-rhamnonate dehydratase GAP
RPNTPH RPnTP hydrolase GAP
SELabcpp selenatenate transport via ABC system (periplasm) GAP
SEPHCHCS 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase GAP
SERASr (L-seryl)adenylate synthase GAP
SERAT serine O-acetyltransferase GAP
SHGO S-2-hydroxyglutarate oxidase GAP
SLNTabcpp selenite ABC transporter (periplasm) GAP
SQGH sulfoquinovosidase GAP
SUCBZS O-succinylbenzoate-CoA synthase GAP
SUCptspp sucrose transport via PEP:Pyr (periplasm) GAP
SULR sulfite reductase (NADPH2) GAP
TAURabcpp taurine transport via ABC system (periplasm) GAP
TDPDRE dTDP-4-dehydrorhamnose 3,5-epimerase GAP
TDPDRR dTDP-4-dehydrorhamnose reductase GAP
THMabcpp thiamine transport via ABC system (periplasm) GAP
THMDt2pp thymidine transport in via proton symport (periplasm) GAP
THRabcpp L-threonine transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__THZPSN3 Thiazole phosphate synthesis GAP
TRPtipp L-tryptophan transport out (periplasm) GAP
__Ecoli_panGEMs__TSULabcpp Thiosulfate transport via ABC system (periplasm) GAP
TYROXDApp Tyramine:oxygen oxidoreductase(deaminating)(flavin-containing) (periplasm) GAP
TYRtipp L-tyrosine transport out (periplasm) GAP
__Ecoli_panGEMs__UAGAAT UDP-N-acetylglucosamine acyltransferase GAP
UDPG4E UDPglucose 4-epimerase GAP
UDPGALM UDPgalactopyranose mutase GAP
__Ecoli_panGEMs__UM4PL UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate-D-alanine ligase GAP
UPPDC1 uroporphyrinogen decarboxylase (uroporphyrinogen III) GAP
URIt2pp uridine transport in via proton symport (periplasm) GAP
VALabcpp L-valine transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__WCOS Tungsten pterin cofactor synthase GAP
XTSNt2rpp Xanthosine transport via proton symport (periplasm) GAP
XYLt2pp D-xylose transport in via proton symport (periplasm) GAP