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Gene
GAP
Associated reactions
  BiGG ID Name Gene reaction rule
23DOGULNt4pp Na+/ 2,3-Dioxo-L-gulonate symport (periplasm) GAP
2DDARAA 2-dehydro-3-deoxy-D-arabinonate Aldolase GAP
3AMACHYD 3-aminoacrylate hydrolase GAP
3KGK 3-keto-L-gulonate kinase GAP
ABUTD Aminobutyraldehyde dehydrogenase GAP
ACALDtpp acetaldehyde reversible transport (periplasm) GAP
ACCOAL acetate-CoA ligase (ADP-forming) GAP
ACONIs aconitate isomerase (spontaneous) GAP
ACS acetyl-CoA synthetase GAP
ACt4pp Na+/Acetate symport (periplasm) GAP
ADNt2pp adenosine transport in via proton symport (periplasm) GAP
AI2abcpp autoinducer-2 ABC transporter GAP
AI2K autoinducer-2 kinase GAP
ALAALAabcpp D-alanyl-D-alanine (DalaDala) transport via ABC system (periplasm) GAP
ALLabcpp D-allose transport via ABC system (periplasm) GAP
ALLK Allose kinase GAP
ALLPI Allose 6-phosphate isomerase GAP
ALLTN allantoinase GAP
ALLTNt2rpp allantoin transport in via proton symport (periplasm) GAP
ALLULPE Allulose 6-phosphate epimerase GAP
ALR2x aldose reductase (methylglyoxal) (nadh) GAP
AMPNTAT aminoalkylphosphonate N-acetyltransferase GAP
AOBUTDs L-2-amino-3-oxobutanoate decarboxylation (spontaneous) GAP
__Ecoli_panGEMs__ARBTNexs Aerobactin Fe-loading reaction (spontaneous) GAP
ARGAGMt7pp Arginine/agmatine antiport (periplasm) GAP
ARGDC arginine decarboxylase GAP
ARMEPNS ?-D-ribose 1-methylphosphonate 5-triphosphate synthase GAP
ASNt2rpp L-asparagine reversible transport via proton symport (periplasm) GAP
ASPt2pp L-aspartate transport in via proton symport (periplasm) GAP
ATPHs ATP amine hydrolysis (spontaneous) GAP
CADVtpp Lysine/Cadaverine antiporter (periplasm) GAP
CBMD carbamate deaminase GAP
CGLYabcpp L-Cysteinylglycine (Cys-Gly) transport via ABC system (periplasm) GAP
CO2tpp CO2 transporter via diffusion (periplasm) GAP
__Ecoli_panGEMs__CPGNexs Coprogen Fe-loading reaction (spontaneaous) GAP
CPL carbon-phosphorous lyase GAP
CRNDt2rpp D-carnitine outward transport (H+ antiport) GAP
CRNt2rpp L-carnitine outward transport (H+ antiport) GAP
CSND Cytosine deaminase GAP
CSNt2pp cytosine transport in via proton symport (periplasm) GAP
CTBTt2rpp cronobetaine outward transport (H+ antiport) GAP
CURR NADPH-dependent curcumin reductase GAP
CYNTAH Cyanate aminohydrolase GAP
CYNTt2pp Cyanate transport via proton symport (periplasm) GAP
CYTDt2pp cytidine transport in via proton symport (periplasm) GAP
__Ecoli_panGEMs__DAPAL 2,3-diaminopropionate amonnia lyase GAP
DATPHs dATP amine hydrolysis (spontaneous) GAP
DHCURR NADPH-dependent dihydrocurcumin reductase GAP
DHGLYH Dehydroglycine Hydratase GAP
DHPTDCs2 4,5-dihydroxy-2,3-pentanedione cyclization (spontaneous) GAP
DMSOtpp Dimethyl sulfoxide transport via diffusion (periplasm) GAP
DXYLTD D-xylonate dehydratase GAP
__Ecoli_panGEMs__ECA4OALpp Enterobacterial common antigen (x4) O-antigen ligase (periplasm) GAP
ETOHtrpp ethanol reversible transport via diffusion (periplasm) GAP
FALDtpp formaldehyde transport via diffusion (periplasm) GAP
FALGTHLs formaldehyde glutathione ligase (spontaneous) GAP
__Ecoli_panGEMs__FE3DCITabcpp Iron transport from ferric-dicitrate via ABC system (periplasm) GAP
__Ecoli_panGEMs__FE3DCITexs Dicitrate Fe(III) binding (spontaneous) GAP
__Ecoli_panGEMs__FE3DCITtonex Ferric-dicitrate transport via ton system (extracellular) GAP
__Ecoli_panGEMs__FE3HOXexs Fe(III) hydroxamate Fe-loading reaction (spontaneaous) GAP
__Ecoli_panGEMs__FECRMexs Ferrichrome Fe(III)-loading reaction (spontaneous) GAP
__Ecoli_panGEMs__FEENTERexs Enterobactin Fe(III) binding (spontaneous) GAP
__Ecoli_panGEMs__FEOXAMexs Ferroxamine Fe3-loading reaction (spontaneous) GAP
__Ecoli_panGEMs__FESD1s Iron-sulfur cluster damage (peroxide, spontaneous) GAP
__Ecoli_panGEMs__FESD2s Iron-sulfur cluster damage (nitrous oxide, spontaneous) GAP
FHL Formate-hydrogen lyase GAP
FUCtpp L-fucose transport via proton symport (periplasm) GAP
G5SADs L-glutamate 5-semialdehyde dehydratase (spontaneous) GAP
DGGH a-galactosidase (melibiose) GAP
__Ecoli_panGEMs__GALT1 Galactosyltransferase I (LPS core synthesis) GAP
GALTptspp Galactitol transport via PEP:Pyr PTS (periplasm) GAP
GCALDD Glycolaldehyde dehydrogenase GAP
GDPMNH GDP-mannose mannosyl hydrolase GAP
__Ecoli_panGEMs__GLCTR2 Glucosyltransferase II (LPS core synthesis) GAP
__Ecoli_panGEMs__GLCTR3 Glucosyltransferase III (LPS core synthesis) GAP
GLUt2rpp L-glutamate transport via proton symport, reversible (periplasm) GAP
GLYCK glycerate kinase GAP
GLYCLTt4pp glycolate transport via sodium symport (periplasm) GAP
GTPHs GTP amine hydrolysis (spontaneous) GAP
H2St1pp h2s transport (periplasm) GAP
H2tpp hydrogen transport diffusion (periplasm) GAP
HCYSMT homocysteine S-methyltransferase GAP
HCYSMT2 Homocysteine Methyltransferase GAP
__Ecoli_panGEMs__HEPK2 LPS heptose kinase II (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPT3 Heptosyltransferase III (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPT4 Heptosyltransferase IV (LPS core synthesis) GAP
HXAND hypoxanthine dehydrogenase GAP
LCADi lactaldehyde dehydrogenase GAP
LCARSyi lacaldehyde reductase (S-propane-1,2-diol forming) GAP
MCITD 2-methylcitrate dehydratase GAP
MCITL2 methylisocitrate lyase GAP
MCITS 2-methylcitrate synthase GAP
MEOHtrpp Methanol reversible transport via diffusion (periplasm) GAP
MEPNabcpp methylpshophonic acid abc transporter GAP
METNA L-amino acid N-acyltransferase GAP
METOX1s methionine oxidation (spontaneous) GAP
METOX2s methionine oxidation 2 (spontaneous) GAP
MMETt2pp S-methylmethionine permease (periplasm) GAP
__Ecoli_panGEMs__MOAT3C 3-deoxy-D-manno-octulosonic acid transferase III (LPS core biosynthesis) GAP
__Ecoli_panGEMs__MOCDS Molybdopterin cytidine dinucleotide synthase GAP
MTHTHFSs (2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran synthesis (spontaneous) GAP
N2Otpp nitrious oxide transport (diffusion) GAP
NOtpp NO transport (diffusion) GAP
NOVBCNtex Novobiocin transport via diffusion (extracellular to periplasm) GAP
__Ecoli_panGEMs__NTRIR3pp Nitrite Reductase (Ubiquinole-8, periplasm) GAP
__Ecoli_panGEMs__NTRIR4pp Nitrite Reductase (Menaquinole-8, periplasm) GAP
__Ecoli_panGEMs__O16A4Lpp O16 anitgen (x4) ligase (periplasm) GAP
__Ecoli_panGEMs__O16AP1pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP2pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP3pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AT Rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate O-acetyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AUNDtpp O16 antigen (flippase, cytoplasm to periplasm) GAP
__Ecoli_panGEMs__O16GALFT Galactofuranosyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16GLCT1 Glucosyltransferase I (LPS O16 antigen biosynthesis) GAP
O2tpp o2 transport via diffusion (periplasm) GAP
OMCDC 2-Oxo-4-methyl-3-carboxypentanoate decarboxylation GAP
P5CD 1-pyrroline-5-carboxylate dehydrogenase GAP
__Ecoli_panGEMs__PAI2T 3-hydroxy-2,4-pentadione 5-phosphate thiolase GAP
PHDA phenylhydantoinase GAP
POAACR peroxyaminoacrylate reductase GAP
PPAt4pp Na+/Propionate symporter (periplasm) GAP
PPDOy Propane-1,2-diol:NADP+ 1-oxidoreductase GAP
PRCPD 5-phospho-?-D-ribosyl 1,2-cyclic phosphate phosphodiesterase GAP
PROD3 Proline dehydrogenase (q8) GAP
PROGLYabcpp L-Prolinylglycine (Pro-Gly) transport via ABC system (periplasm) GAP
PROt4pp Na+/Proline-L symporter (periplasm) GAP
__Ecoli_panGEMs__PUACGAMS Poly-?-1,6-N-acetyl-D-glucosamine synthase GAP
__Ecoli_panGEMs__PUACGAMtr Transport of poly-?-1,6-N-acetyl-D-glucosamine (poly-?-1,6-N-acetyl-D-glucosamine synthase) GAP
PUNP7 purine-nucleoside phosphorylase (Xanthosine) GAP
PYROX pyrimidine oxygenase GAP
R15BPK ribose-1,5-bisphosphokinase GAP
RFAMPtex Rifampin transport via diffusion (extracellular to periplasm) GAP
__Ecoli_panGEMs__RHAT1 Rhamnosyltransferase I (LPS core biosynthesis) GAP
RPNTPH RPnTP hydrolase GAP
SO2tpp SO2 transport via diffusion (periplasm) GAP
SUCTARTtpp succinate:D-tartrate antiporter (periplasm) GAP
TARTt2_3pp D-tartrate transport via proton symport (3 H) (periplasm) GAP
TDPDRE dTDP-4-dehydrorhamnose 3,5-epimerase GAP
TDPDRR dTDP-4-dehydrorhamnose reductase GAP
TEO2M tellurite methyltransferase GAP
THMDt2pp thymidine transport in via proton symport (periplasm) GAP
UDPGALM UDPgalactopyranose mutase GAP
UGCIAMH ureidoglycine aminohydrolase GAP
URACPAH peroxyureidoacrylate hydrolase GAP
URIt2pp uridine transport in via proton symport (periplasm) GAP
XAND xanthine dehydrogenase GAP
XTSNt2rpp Xanthosine transport via proton symport (periplasm) GAP
XYLUt2pp L-xylulose transport in via proton symport (periplasm) GAP