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Gene
GAP
Associated reactions
  BiGG ID Name Gene reaction rule
23DOGULNt4pp Na+/ 2,3-Dioxo-L-gulonate symport (periplasm) GAP
2DDARAA 2-dehydro-3-deoxy-D-arabinonate Aldolase GAP
__Ecoli_panGEMs__2HPTCOAT 2-hydroxycyclohepta-1,4,6-triene-1-carboxyl-CoA thioesterase GAP
3HCINNMH 3-hydroxycinnamate hydroxylase GAP
3HPADHi 3-Hydroxypropanal Dehydrogenase GAP
3HPPPNH 3-(3-hydroxy-phenyl)propionate hydroxylase GAP
3OXCOAT 3-oxoadipyl-CoA thiolase GAP
3SLAR 3-sulfolactaldehyde reductase GAP
42A12BOOXpp 4-(2-Aminoethyl)-1,2-benzenediol:oxygen oxidoreductase(deaminating)(flavin-containing) GAP
4ABZGLUH p-aminobenzoyl-glutamate hydrolase GAP
4ABZGLUtr p-aminobenzoyl glutamate:H+ symporter GAP
6D6SFK 6-deoxy-6-sulfofructose kinase GAP
6D6SPA 6-deoxy-6-sulfofructose-1-phosphate aldolase GAP
ACALDtpp acetaldehyde reversible transport (periplasm) GAP
ACONIs aconitate isomerase (spontaneous) GAP
AI2abcpp autoinducer-2 ABC transporter GAP
AI2K autoinducer-2 kinase GAP
ALAALAD D-alanine-D-alanine dipeptidase GAP
ALDD19xr aldehyde dehydrogenase (phenylacetaldehyde, NAD) GAP
AOBUTDs L-2-amino-3-oxobutanoate decarboxylation (spontaneous) GAP
__Ecoli_panGEMs__ARBTNexs Aerobactin Fe-loading reaction (spontaneous) GAP
ASO3t8pp arsenite efflux via ATP hydrolysis (periplasm) GAP
ATPHs ATP amine hydrolysis (spontaneous) GAP
CBMD carbamate deaminase GAP
CHOLATEtpp cholate transport via proton antiport GAP
CINNDO Cinnamate dioxygenase GAP
CO2tpp CO2 transporter via diffusion (periplasm) GAP
__Ecoli_panGEMs__CPGNexs Coprogen Fe-loading reaction (spontaneaous) GAP
CURR NADPH-dependent curcumin reductase GAP
CYNTAH Cyanate aminohydrolase GAP
CYNTt2pp Cyanate transport via proton symport (periplasm) GAP
DATPHs dATP amine hydrolysis (spontaneous) GAP
DHACOAH 2,3-dehydroadipyl-CoA hydratase GAP
DHCIND 2,3-dihydroxycinnamate dehydrogenase GAP
DHCINDO 2,3-dihydroxycinnamate 1,2-dioxygenase GAP
DHCURR NADPH-dependent dihydrocurcumin reductase GAP
DHGLYH Dehydroglycine Hydratase GAP
DHPPD 2,3-dihydroxyphenylpropionate dehydrogenase GAP
DHPStex 2,3-dihydroxypropane 1-sulfonate transport via diffusion GAP
DHPStr 2,3-dihydroxypropane 1-sulfonate transporter GAP
DHPTDCs2 4,5-dihydroxy-2,3-pentanedione cyclization (spontaneous) GAP
DMSOtpp Dimethyl sulfoxide transport via diffusion (periplasm) GAP
DXYLTD D-xylonate dehydratase GAP
__Ecoli_panGEMs__ECA4OALpp Enterobacterial common antigen (x4) O-antigen ligase (periplasm) GAP
ETOHtrpp ethanol reversible transport via diffusion (periplasm) GAP
FALDtpp formaldehyde transport via diffusion (periplasm) GAP
FALGTHLs formaldehyde glutathione ligase (spontaneous) GAP
__Ecoli_panGEMs__FE3DCITexs Dicitrate Fe(III) binding (spontaneous) GAP
__Ecoli_panGEMs__FE3HOXexs Fe(III) hydroxamate Fe-loading reaction (spontaneaous) GAP
__Ecoli_panGEMs__FECRMexs Ferrichrome Fe(III)-loading reaction (spontaneous) GAP
__Ecoli_panGEMs__FEENTERexs Enterobactin Fe(III) binding (spontaneous) GAP
__Ecoli_panGEMs__FEOXAMexs Ferroxamine Fe3-loading reaction (spontaneous) GAP
__Ecoli_panGEMs__FESD1s Iron-sulfur cluster damage (peroxide, spontaneous) GAP
__Ecoli_panGEMs__FESD2s Iron-sulfur cluster damage (nitrous oxide, spontaneous) GAP
FRULYSDG Fructoselysine phosphate deglycase GAP
FRULYSE fructoselysine 3-epimerase GAP
FRULYSK Fructoselysine Kinase GAP
FRULYSt2pp Fructoselysine transport via proton symport (periplasm) GAP
FRUURt2rpp D-fructuronate transport via proton symport, reversible (periplasm) GAP
G5SADs L-glutamate 5-semialdehyde dehydratase (spontaneous) GAP
GALCTNLt2pp L-galactonate transport via proton symport (periplasm) GAP
__Ecoli_panGEMs__GALT1 Galactosyltransferase I (LPS core synthesis) GAP
GALTptspp Galactitol transport via PEP:Pyr PTS (periplasm) GAP
GGGABADr gamma-glutamyl-gamma aminobutyric acid dehydrogenase GAP
GGGABAH gamma-glutamyl-gamma-aminobutyric acid hydrolase GAP
GGPTRCO gamma glutamyl putrescine oxidase GAP
GGPTRCS gamma glutamyl putrescine synthase GAP
__Ecoli_panGEMs__GHBDHx Gamma-hydroxybutyrate dehydrogenase (NADH) GAP
__Ecoli_panGEMs__GLCTR2 Glucosyltransferase II (LPS core synthesis) GAP
__Ecoli_panGEMs__GLCTR3 Glucosyltransferase III (LPS core synthesis) GAP
GTPHs GTP amine hydrolysis (spontaneous) GAP
H2St1pp h2s transport (periplasm) GAP
H2tpp hydrogen transport diffusion (periplasm) GAP
HADPCOADH3 3-hydroxyadipyl-CoA dehydrogenase (NAD+) GAP
HCINNMt2rpp 3-hydroxycinnamic acid transport via proton symport, reversible (periplasm) GAP
HCYSMT homocysteine S-methyltransferase GAP
HCYSMT2 Homocysteine Methyltransferase GAP
__Ecoli_panGEMs__HEPK2 LPS heptose kinase II (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPT3 Heptosyltransferase III (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPT4 Heptosyltransferase IV (LPS core synthesis) GAP
HKNDDH 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase GAP
HKNTDH_1 2-hydroxy-6-ketononotrienedioate hydrolase GAP
HOPNTAL 4-hydroxy-2-oxopentanoate aldolase GAP
HPACOAT hydroxyphenylacetyl-CoA thioesterase GAP
HPPPNDO 2,3-dihydroxypheylpropionate 1,2-dioxygenase GAP
HPPPNt2rpp 3-(3-hydroxyphenyl)propionate transport via proton symport, reversible (periplasm) GAP
INOSTO myo-Inositol:oxygen oxidoreductase GAP
MALDDH malate decarboxylating oxidoreductase (decarboxylating) GAP
MANGLYCptspp 2-O-alpha-mannosyl-D-glycerate transport via PEP:Pyr PTS (periplasm) GAP
MANPGH 2-O-alpha-mannosyl-6-phosphate-D-glycerate hydrolase GAP
MEOHtrpp Methanol reversible transport via diffusion (periplasm) GAP
MEPNabcpp methylpshophonic acid abc transporter GAP
METOX1s methionine oxidation (spontaneous) GAP
METOX2s methionine oxidation 2 (spontaneous) GAP
MMCD Methylmalonyl-CoA decarboxylase GAP
MMETt2pp S-methylmethionine permease (periplasm) GAP
__Ecoli_panGEMs__MOAT3C 3-deoxy-D-manno-octulosonic acid transferase III (LPS core biosynthesis) GAP
MTHTHFSs (2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran synthesis (spontaneous) GAP
N2Otpp nitrious oxide transport (diffusion) GAP
NOtpp NO transport (diffusion) GAP
NOVBCNtex Novobiocin transport via diffusion (extracellular to periplasm) GAP
__Ecoli_panGEMs__O16A4Lpp O16 anitgen (x4) ligase (periplasm) GAP
__Ecoli_panGEMs__O16AP1pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP2pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP3pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AT Rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate O-acetyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AUNDtpp O16 antigen (flippase, cytoplasm to periplasm) GAP
__Ecoli_panGEMs__O16GALFT Galactofuranosyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16GLCT1 Glucosyltransferase I (LPS O16 antigen biosynthesis) GAP
O2tpp o2 transport via diffusion (periplasm) GAP
OMCDC 2-Oxo-4-methyl-3-carboxypentanoate decarboxylation GAP
OP4ENH 2-oxopent-4-enoate hydratase GAP
OXCOAHDH oxepin-CoA hydrolase/ 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase (NADP+) GAP
OXDHCOAT 3-oxo-5,6-dehydrosuberyl-CoA thiolase GAP
PACCOAE ring 1,2-phenylacetyl-CoA epoxidase (NADPH) GAP
PACCOAL phenylacetate-CoA ligase GAP
PACOAT phenylacetyl-CoA thioesterase GAP
__Ecoli_panGEMs__PAI2I Phospho-AI-2 isomerase GAP
__Ecoli_panGEMs__PAI2T 3-hydroxy-2,4-pentadione 5-phosphate thiolase GAP
PEAMNOpp Phenethylamine oxidase GAP
PPCSCT Propanoyl-CoA: succinate CoA-transferase GAP
PPPNDO Phenylpropanoate Dioxygenase GAP
PSCLYSt2pp psicoselysine transport via proton symport (periplasm) GAP
REPHACCOAI ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming) GAP
RFAMPtex Rifampin transport via diffusion (extracellular to periplasm) GAP
__Ecoli_panGEMs__RHAT1 Rhamnosyltransferase I (LPS core biosynthesis) GAP
SELR selenate reductase GAP
SO2tpp SO2 transport via diffusion (periplasm) GAP
SQGH sulfoquinovosidase GAP
SQtex sulphoquinovose transport via diffusion GAP
SQtr sulfoquinovose transporter GAP
SQVOSI sulfoquinovose isomerase GAP
TDPDRE dTDP-4-dehydrorhamnose 3,5-epimerase GAP
TDPDRR dTDP-4-dehydrorhamnose reductase GAP
TYROXDApp Tyramine:oxygen oxidoreductase(deaminating)(flavin-containing) (periplasm) GAP
UDPGALM UDPgalactopyranose mutase GAP
XYLt2pp D-xylose transport in via proton symport (periplasm) GAP
XYLUt2pp L-xylulose transport in via proton symport (periplasm) GAP