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Gene
GAP
Associated reactions
  BiGG ID Name Gene reaction rule
2DDARAA 2-dehydro-3-deoxy-D-arabinonate Aldolase GAP
__Ecoli_panGEMs__4PCPpp Tetrapeptide L,D-carboxypeptidase (periplasm) GAP
5DGLCNR 5-dehydro-D-gluconate reductase GAP
5DGLCNt2rpp 5-Dehydro-D-gluconate transport via proton symport, reversible (periplasm) GAP
ACACt2pp acetoacetate transport via proton symport (periplasm) GAP
ADNt2pp adenosine transport in via proton symport (periplasm) GAP
__Ecoli_panGEMs__AGM4PCPpp N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide L,D-carboxypeptidase (periplasmic) GAP
ALLabcpp D-allose transport via ABC system (periplasm) GAP
ALLPI Allose 6-phosphate isomerase GAP
ALLULPE Allulose 6-phosphate epimerase GAP
ALR2x aldose reductase (methylglyoxal) (nadh) GAP
BUTCT Acetyl-CoA:butyrate-CoA transferase GAP
BUTt2rpp Butyrate transport via proton symport, reversible (periplasm) GAP
CHLabcpp choline transport via ABC system (periplasm) GAP
CHLt3pp choline transport via proton antiport (periplasm) GAP
CYTD cytidine deaminase GAP
CYTDt2pp cytidine transport in via proton symport (periplasm) GAP
DCYTD deoxycytidine deaminase GAP
DHNCOAS 1,4-dihydroxy-2-napthoyl-CoA synthase GAP
DMQMT 3-Dimethylubiquinonol 3-methyltransferase GAP
DURADx dihydrouracil dehydrogenase (NAD) GAP
DXYLTD D-xylonate dehydratase GAP
__Ecoli_panGEMs__ECA4OALpp Enterobacterial common antigen (x4) O-antigen ligase (periplasm) GAP
__Ecoli_panGEMs__FE3DCITabcpp Iron transport from ferric-dicitrate via ABC system (periplasm) GAP
__Ecoli_panGEMs__FE3DCITtonex Ferric-dicitrate transport via ton system (extracellular) GAP
FRUK fructose-1-phosphate kinase GAP
FRUptspp D-fructose transport via PEP:Pyr PTS (periplasm) GAP
FUCtpp L-fucose transport via proton symport (periplasm) GAP
G3PD6 glycerol-3-phosphate dehydrogenase (menaquinone-8) GAP
G3PD7 glycerol-3-phosphate dehydrogenase (demethylmenaquinone-8) GAP
__Ecoli_panGEMs__GALT1 Galactosyltransferase I (LPS core synthesis) GAP
GALTptspp Galactitol transport via PEP:Pyr PTS (periplasm) GAP
GLCabcpp D-glucose transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__GLCTR2 Glucosyltransferase II (LPS core synthesis) GAP
__Ecoli_panGEMs__GLCTR3 Glucosyltransferase III (LPS core synthesis) GAP
GLYBt3pp Glycine betaine transport via proton antiport (periplasm) GAP
GLYC3Pt6pp Glycerol-3-phosphate : phosphate antiporter (periplasm) GAP
GPDDA1pp Glycerophosphodiester phosphodiesterase (Glycerophosphocholine) GAP
GPDDA2pp Glycerophosphodiester phosphodiesterase (Glycerophosphoethanolamine) GAP
GPDDA3pp Glycerophosphodiester phosphodiesterase (Glycerophosphoserine) GAP
GPDDA4pp Glycerophosphodiester phosphodiesterase (Glycerophosphoglycerol) GAP
GPDDA5pp Glycerophosphodiester phosphodiesterase (Glycerophosphoinositol) GAP
GTPCI GTP cyclohydrolase I GAP
HCYSMT homocysteine S-methyltransferase GAP
HCYSMT2 Homocysteine Methyltransferase GAP
__Ecoli_panGEMs__HEPK2 LPS heptose kinase II (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPT4 Heptosyltransferase IV (LPS core synthesis) GAP
HEXt2rpp hexanoate transport via proton symport, reversible (periplasm) GAP
HXCT Acetyl-CoA:hexanoate-CoA transferase GAP
ICHORS isochorismate synthase GAP
IDOND L-idonate 5-dehydrogenase GAP
IDOND2 L-indonate 5-dehydrogenase (NADP) GAP
IDONt2rpp L-idonate transport via proton symport, reversible (periplasm) GAP
__Ecoli_panGEMs__LA4NTpp 4-amino-4-deoxy-L-arabinotransferase (LPS lipid A modification, periplasmic face of membrane)) GAP
LACZpp b-galactosidase GAP
LDH_D2 D-lactate dehydrogenase GAP
LKDRA 2-keto-3-deoxy-L-rhamnonate aldolase GAP
LYSt2pp L-lysine transport in via proton symport (periplasm) GAP
MDH2 Malate dehydrogenase (ubiquinone 8 as acceptor) GAP
MDH3 Malate dehydrogenase (menaquinone 8 as acceptor) GAP
MEPNabcpp methylpshophonic acid abc transporter GAP
MMETt2pp S-methylmethionine permease (periplasm) GAP
__Ecoli_panGEMs__MOAT3C 3-deoxy-D-manno-octulosonic acid transferase III (LPS core biosynthesis) GAP
NADH17pp NADH dehydrogenase (menaquinone-8 & 3 protons) (periplasm) GAP
NADH18pp NADH dehydrogenase (demethylmenaquinone-8 & 3 protons) (periplasm) GAP
__Ecoli_panGEMs__NO3R2bpp Nitrate reductase (Menaquinol-8) (periplasm) GAP
__Ecoli_panGEMs__O16A4Lpp O16 anitgen (x4) ligase (periplasm) GAP
__Ecoli_panGEMs__O16AP1pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP2pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP3pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AT Rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate O-acetyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AUNDtpp O16 antigen (flippase, cytoplasm to periplasm) GAP
__Ecoli_panGEMs__O16GALFT Galactofuranosyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16GLCT1 Glucosyltransferase I (LPS O16 antigen biosynthesis) GAP
OHPHM 2-octaprenyl-6-hydroxyphenol methylase GAP
PHEMEabcpp protoheme transport via ABC system (periplasm) GAP
PMPK phosphomethylpyrimidine kinase GAP
PSURIK pseudouridine kinase GAP
PSURItpp pseudouridine transport via permease GAP
PUNP7 purine-nucleoside phosphorylase (Xanthosine) GAP
__Ecoli_panGEMs__RHAT1 Rhamnosyltransferase I (LPS core biosynthesis) GAP
__Ecoli_panGEMs__RNDR1 Ribonucleoside-diphosphate reductase (ADP) GAP
__Ecoli_panGEMs__RNDR2 Ribonucleoside-diphosphate reductase (GDP) GAP
__Ecoli_panGEMs__RNDR3 Ribonucleoside-diphosphate reductase (CDP) GAP
__Ecoli_panGEMs__RNDR4 Ribonucleoside-diphosphate reductase (UDP) GAP
SEPHCHCS 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase GAP
SHCHCS3 2-succinyl-6-hydroxy-2,4-cyclohexadiene 1-carboxylate synthase GAP
SUCBZL o-succinylbenzoate-CoA ligase GAP
SUCBZS O-succinylbenzoate-CoA synthase GAP
TDPDRE dTDP-4-dehydrorhamnose 3,5-epimerase GAP
THMDt2pp thymidine transport in via proton symport (periplasm) GAP
UDPGALM UDPgalactopyranose mutase GAP
UDPGDC UDP-glucuronate C-4'' decarboxylase GAP
ULA4NFT UDP-L-Ara4N formyltransferase GAP
__Ecoli_panGEMs__ULA4Ntppi Transport (cytoplasm to periplasm) GAP
__Ecoli_panGEMs__UPLA4FNF Undecaprenyl phosphate-L-Ara4FN formylase GAP
__Ecoli_panGEMs__UPLA4FNT Undecaprenyl phosphate-L-Ara4FN transferase GAP
URIt2pp uridine transport in via proton symport (periplasm) GAP
XTSNt2rpp Xanthosine transport via proton symport (periplasm) GAP
YUMPS yUMP synthetase GAP