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Gene
GAP
Associated reactions
  BiGG ID Name Gene reaction rule
23DOGULNt4pp Na+/ 2,3-Dioxo-L-gulonate symport (periplasm) GAP
2DDARAA 2-dehydro-3-deoxy-D-arabinonate Aldolase GAP
__Ecoli_panGEMs__2HPTCOAT 2-hydroxycyclohepta-1,4,6-triene-1-carboxyl-CoA thioesterase GAP
3HCINNMH 3-hydroxycinnamate hydroxylase GAP
3HPADHi 3-Hydroxypropanal Dehydrogenase GAP
3HPPPNH 3-(3-hydroxy-phenyl)propionate hydroxylase GAP
3OXCOAT 3-oxoadipyl-CoA thiolase GAP
3SLAR 3-sulfolactaldehyde reductase GAP
42A12BOOXpp 4-(2-Aminoethyl)-1,2-benzenediol:oxygen oxidoreductase(deaminating)(flavin-containing) GAP
4ABZGLUH p-aminobenzoyl-glutamate hydrolase GAP
4ABZGLUtr p-aminobenzoyl glutamate:H+ symporter GAP
6D6SFK 6-deoxy-6-sulfofructose kinase GAP
6D6SPA 6-deoxy-6-sulfofructose-1-phosphate aldolase GAP
ACALDtpp acetaldehyde reversible transport (periplasm) GAP
ACONIs aconitate isomerase (spontaneous) GAP
AI2abcpp autoinducer-2 ABC transporter GAP
AI2K autoinducer-2 kinase GAP
ALAALAD D-alanine-D-alanine dipeptidase GAP
ALDD19xr aldehyde dehydrogenase (phenylacetaldehyde, NAD) GAP
AOBUTDs L-2-amino-3-oxobutanoate decarboxylation (spontaneous) GAP
__Ecoli_panGEMs__ARBTNexs Aerobactin Fe-loading reaction (spontaneous) GAP
ASO3t8pp arsenite efflux via ATP hydrolysis (periplasm) GAP
ATPHs ATP amine hydrolysis (spontaneous) GAP
CBMD carbamate deaminase GAP
CBPS carbamoyl-phosphate synthase (glutamine-hydrolysing) GAP
CHOLATEtpp cholate transport via proton antiport GAP
CINNDO Cinnamate dioxygenase GAP
CO2tpp CO2 transporter via diffusion (periplasm) GAP
__Ecoli_panGEMs__CPGNexs Coprogen Fe-loading reaction (spontaneaous) GAP
CURR NADPH-dependent curcumin reductase GAP
CYNTAH Cyanate aminohydrolase GAP
CYNTt2pp Cyanate transport via proton symport (periplasm) GAP
DATPHs dATP amine hydrolysis (spontaneous) GAP
DHACOAH 2,3-dehydroadipyl-CoA hydratase GAP
DHCIND 2,3-dihydroxycinnamate dehydrogenase GAP
DHCINDO 2,3-dihydroxycinnamate 1,2-dioxygenase GAP
DHCURR NADPH-dependent dihydrocurcumin reductase GAP
DHGLYH Dehydroglycine Hydratase GAP
DHPPD 2,3-dihydroxyphenylpropionate dehydrogenase GAP
DHPStex 2,3-dihydroxypropane 1-sulfonate transport via diffusion GAP
DHPStr 2,3-dihydroxypropane 1-sulfonate transporter GAP
DHPTDCs2 4,5-dihydroxy-2,3-pentanedione cyclization (spontaneous) GAP
DMSOtpp Dimethyl sulfoxide transport via diffusion (periplasm) GAP
DXYLTD D-xylonate dehydratase GAP
__Ecoli_panGEMs__ECA4OALpp Enterobacterial common antigen (x4) O-antigen ligase (periplasm) GAP
ETOHtrpp ethanol reversible transport via diffusion (periplasm) GAP
FALDtpp formaldehyde transport via diffusion (periplasm) GAP
FALGTHLs formaldehyde glutathione ligase (spontaneous) GAP
__Ecoli_panGEMs__FE3DCITabcpp Iron transport from ferric-dicitrate via ABC system (periplasm) GAP
__Ecoli_panGEMs__FE3DCITexs Dicitrate Fe(III) binding (spontaneous) GAP
__Ecoli_panGEMs__FE3DCITtonex Ferric-dicitrate transport via ton system (extracellular) GAP
__Ecoli_panGEMs__FE3HOXexs Fe(III) hydroxamate Fe-loading reaction (spontaneaous) GAP
__Ecoli_panGEMs__FECRMexs Ferrichrome Fe(III)-loading reaction (spontaneous) GAP
__Ecoli_panGEMs__FEENTERexs Enterobactin Fe(III) binding (spontaneous) GAP
__Ecoli_panGEMs__FEOXAMexs Ferroxamine Fe3-loading reaction (spontaneous) GAP
__Ecoli_panGEMs__FESD1s Iron-sulfur cluster damage (peroxide, spontaneous) GAP
__Ecoli_panGEMs__FESD2s Iron-sulfur cluster damage (nitrous oxide, spontaneous) GAP
FRULYSDG Fructoselysine phosphate deglycase GAP
FRULYSE fructoselysine 3-epimerase GAP
FRULYSK Fructoselysine Kinase GAP
FRULYSt2pp Fructoselysine transport via proton symport (periplasm) GAP
FRUURt2rpp D-fructuronate transport via proton symport, reversible (periplasm) GAP
G5SADs L-glutamate 5-semialdehyde dehydratase (spontaneous) GAP
GALCTNLt2pp L-galactonate transport via proton symport (periplasm) GAP
__Ecoli_panGEMs__GALT1 Galactosyltransferase I (LPS core synthesis) GAP
GALTptspp Galactitol transport via PEP:Pyr PTS (periplasm) GAP
GGGABADr gamma-glutamyl-gamma aminobutyric acid dehydrogenase GAP
GGGABAH gamma-glutamyl-gamma-aminobutyric acid hydrolase GAP
GGPTRCO gamma glutamyl putrescine oxidase GAP
GGPTRCS gamma glutamyl putrescine synthase GAP
__Ecoli_panGEMs__GHBDHx Gamma-hydroxybutyrate dehydrogenase (NADH) GAP
__Ecoli_panGEMs__GLCTR2 Glucosyltransferase II (LPS core synthesis) GAP
__Ecoli_panGEMs__GLCTR3 Glucosyltransferase III (LPS core synthesis) GAP
GTPHs GTP amine hydrolysis (spontaneous) GAP
H2St1pp h2s transport (periplasm) GAP
H2tpp hydrogen transport diffusion (periplasm) GAP
HADPCOADH3 3-hydroxyadipyl-CoA dehydrogenase (NAD+) GAP
HCINNMt2rpp 3-hydroxycinnamic acid transport via proton symport, reversible (periplasm) GAP
HCYSMT homocysteine S-methyltransferase GAP
HCYSMT2 Homocysteine Methyltransferase GAP
__Ecoli_panGEMs__HEPK2 LPS heptose kinase II (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPT3 Heptosyltransferase III (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPT4 Heptosyltransferase IV (LPS core synthesis) GAP
HKNDDH 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase GAP
HKNTDH_1 2-hydroxy-6-ketononotrienedioate hydrolase GAP
HOPNTAL 4-hydroxy-2-oxopentanoate aldolase GAP
HPACOAT hydroxyphenylacetyl-CoA thioesterase GAP
HPPPNDO 2,3-dihydroxypheylpropionate 1,2-dioxygenase GAP
HPPPNt2rpp 3-(3-hydroxyphenyl)propionate transport via proton symport, reversible (periplasm) GAP
INOSTO myo-Inositol:oxygen oxidoreductase GAP
MALDDH malate decarboxylating oxidoreductase (decarboxylating) GAP
MANGLYCptspp 2-O-alpha-mannosyl-D-glycerate transport via PEP:Pyr PTS (periplasm) GAP
MANPGH 2-O-alpha-mannosyl-6-phosphate-D-glycerate hydrolase GAP
MEOHtrpp Methanol reversible transport via diffusion (periplasm) GAP
MEPNabcpp methylpshophonic acid abc transporter GAP
METOX1s methionine oxidation (spontaneous) GAP
METOX2s methionine oxidation 2 (spontaneous) GAP
MMCD Methylmalonyl-CoA decarboxylase GAP
MMETt2pp S-methylmethionine permease (periplasm) GAP
__Ecoli_panGEMs__MOAT3C 3-deoxy-D-manno-octulosonic acid transferase III (LPS core biosynthesis) GAP
MTHTHFSs (2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran synthesis (spontaneous) GAP
N2Otpp nitrious oxide transport (diffusion) GAP
NOtpp NO transport (diffusion) GAP
NOVBCNtex Novobiocin transport via diffusion (extracellular to periplasm) GAP
__Ecoli_panGEMs__O16A4Lpp O16 anitgen (x4) ligase (periplasm) GAP
__Ecoli_panGEMs__O16AP1pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP2pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP3pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AT Rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate O-acetyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AUNDtpp O16 antigen (flippase, cytoplasm to periplasm) GAP
__Ecoli_panGEMs__O16GALFT Galactofuranosyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16GLCT1 Glucosyltransferase I (LPS O16 antigen biosynthesis) GAP
O2tpp o2 transport via diffusion (periplasm) GAP
OMCDC 2-Oxo-4-methyl-3-carboxypentanoate decarboxylation GAP
OP4ENH 2-oxopent-4-enoate hydratase GAP
OXCOAHDH oxepin-CoA hydrolase/ 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase (NADP+) GAP
OXDHCOAT 3-oxo-5,6-dehydrosuberyl-CoA thiolase GAP
PACCOAE ring 1,2-phenylacetyl-CoA epoxidase (NADPH) GAP
PACCOAL phenylacetate-CoA ligase GAP
PACOAT phenylacetyl-CoA thioesterase GAP
__Ecoli_panGEMs__PAI2I Phospho-AI-2 isomerase GAP
__Ecoli_panGEMs__PAI2T 3-hydroxy-2,4-pentadione 5-phosphate thiolase GAP
PEAMNOpp Phenethylamine oxidase GAP
PPCSCT Propanoyl-CoA: succinate CoA-transferase GAP
PPPNDO Phenylpropanoate Dioxygenase GAP
PSCLYSt2pp psicoselysine transport via proton symport (periplasm) GAP
REPHACCOAI ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming) GAP
RFAMPtex Rifampin transport via diffusion (extracellular to periplasm) GAP
__Ecoli_panGEMs__RHAT1 Rhamnosyltransferase I (LPS core biosynthesis) GAP
SO2tpp SO2 transport via diffusion (periplasm) GAP
SQGH sulfoquinovosidase GAP
SQtex sulphoquinovose transport via diffusion GAP
SQtr sulfoquinovose transporter GAP
SQVOSI sulfoquinovose isomerase GAP
TDPDRE dTDP-4-dehydrorhamnose 3,5-epimerase GAP
TYROXDApp Tyramine:oxygen oxidoreductase(deaminating)(flavin-containing) (periplasm) GAP
UDPGALM UDPgalactopyranose mutase GAP
XYLt2pp D-xylose transport in via proton symport (periplasm) GAP
XYLUt2pp L-xylulose transport in via proton symport (periplasm) GAP