O2tex in GCF_004010615_1_json
- oxygen transport via diffusion (extracellular to periplasm)
- o2_e:0 ⇌ o2_p:0
- Bounds: (-1000.0, 1000.0)
- Universal Reaction: O2tex
Gene Reaction Rule
BACCGLEK_03939 or BACCGLEK_04690 or BACCGLEK_00161 or BACCGLEK_01289
| BiGG ID | Name | |
|---|---|---|
 |
BACCGLEK_03939 | None |
|
BACCGLEK_04690 | None |
|
BACCGLEK_01289 | None |
|
BACCGLEK_00161 | None |
MEMOTE Flags
This reaction was flagged in the following MEMOTE tests:
There are a total of 5 reversible oxygen-containing reactions (9.80% of all oxygen-containing reactions): O2tpp, EX_o2_e, O2Stex, INOSTO, O2tex
The directionality of oxygen-producing/-consuming reactions affects the model's ability to grow anaerobically i.e. create faux-anaerobic organisms. This test reports how many of these oxygen-containing reactions are reversible. This test does not have any mandatory 'pass' criteria. Implementation: First, find the metabolite representing atmospheric oxygen in the model on the basis of an internal mapping table or by specifically looking for the formula "O2". Then, find all reactions that produce or consume oxygen and report those that are reversible.