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  5. __LactoPanGEM__METSRabc
__LactoPanGEM__METSRabc in GCF_009679205_1_json
  • L methionine R oxide transport via ABC system
  • h2o_c:0 + __LactoPanGEM__atp_c:0 → __LactoPanGEM__adp_c:0 + __LactoPanGEM__h_c:0 + __LactoPanGEM__metox__R_c:0 + __LactoPanGEM__pi_c:0
  • Bounds: (0.0, 1000.0)
  • Universal Reaction: __LactoPanGEM__METSRabc
Reaction Participants
Stoich. BiGG ID Name Reference x [side] Compartment
-1 h2o_c:0 water CHEBI:15377 - -
-1 __LactoPanGEM__atp_c:0 ATP - - -
1 __LactoPanGEM__adp_c:0 ADP - - -
1 __LactoPanGEM__h_c:0 H+ - - -
1 __LactoPanGEM__metox__R_c:0 L-methionine R-oxide - - -
1 __LactoPanGEM__pi_c:0 Phosphate - - -
Gene Reaction Rule
IOBALBJM_06060 or IOBALBJM_07160 or IOBALBJM_06570 or IOBALBJM_06070 or IOBALBJM_06080 or IOBALBJM_21670 or IOBALBJM_06590 or IOBALBJM_07150 or IOBALBJM_06580
BiGG ID Name
IOBALBJM_06060 None
IOBALBJM_06570 None
IOBALBJM_07150 None
IOBALBJM_06590 None
IOBALBJM_21670 None
IOBALBJM_06580 None
IOBALBJM_07160 None
IOBALBJM_06080 None
IOBALBJM_06070 None
MEMOTE Flags
This reaction was flagged in the following MEMOTE tests:

A total of 286 (28.86%) reactions are mass unbalanced with at least one of the metabolites not having a formula or the overall mass not equal to 0: __LactoPanGEM__GLTAL, __LactoPanGEM__2MPCAC, __LactoPanGEM__LEUTRS, __LactoPanGEM__FRTT2, __LactoPanGEM__DASYN161, ...

This will exclude biomass, exchange and demand reactions as they are unbalanced by definition. It will also fail all reactions where at least one metabolite does not have a formula defined. In steady state, for each metabolite the sum of influx equals the sum of efflux. Hence the net masses of both sides of any model reaction have to be equal. Reactions where at least one metabolite does not have a formula are not considered to be balanced, even though the remaining metabolites participating in the reaction might be. Implementation: For each reaction that isn't a boundary or biomass reaction check if each metabolite has a non-zero elements attribute and if so calculate if the overall element balance of reactants and products is equal to zero.