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Gene
GAP
Associated reactions
  BiGG ID Name Gene reaction rule
2DDARAA 2-dehydro-3-deoxy-D-arabinonate Aldolase GAP
2DGLCptspp 2-Deoxy-D-glucose transport via PEP:Pyr PTS (periplasm) GAP
__Ecoli_panGEMs__3OAS121 3-oxoacyl-[acyl-carrier-protein] synthase (n-C12:1) GAP
__Ecoli_panGEMs__3OAS141 3-oxoacyl-[acyl-carrier-protein] synthase (n-C14:1) GAP
__Ecoli_panGEMs__3OAS161 3-oxoacyl-[acyl-carrier-protein] synthase (n-C16:1) GAP
5DGLCNR 5-dehydro-D-gluconate reductase GAP
5DGLCNt2rpp 5-Dehydro-D-gluconate transport via proton symport, reversible (periplasm) GAP
ACCOAC acetyl-CoA carboxylase GAP
ACGAptspp N-Acetyl-D-glucosamine transport via PEP:Pyr PTS (periplasm) GAP
ACM6PH N-acetylmuramate 6-phosphate hydrolase GAP
ACMANAptspp N-acetyl-D-mannosamine transport via PTS (periplasm) GAP
__Ecoli_panGEMs__ACMUMptspp N-acetylmuramate transport via PEP:Pyr PTS (periplasm) GAP
ACOXT acetyl-CoA:oxalate CoA-transferase GAP
ADNt2pp adenosine transport in via proton symport (periplasm) GAP
ADOCBLtonex Adenosylcobalimin transport via ton system (extermal) GAP
AKGt2rpp 2-oxoglutarate reversible transport via symport (periplasm) GAP
ALATA_L L-alanine transaminase GAP
ARBTptspp arbutin transport via PEP:Pyr PTS (periplasm) GAP
__Ecoli_panGEMs__ASCBptspp L-ascorbate transport via PEP:Pyr PTS (periplasm) GAP
ASPO3 L-aspartate oxidase GAP
ASPO4 L-aspartate oxidase GAP
ASPO5 L-aspartate oxidase GAP
ASPO6 L-aspartate oxidase GAP
CBItonex Cobinamide transport via ton system (extermal) GAP
CBL1tonex Cob(1)alamin transport via ton system (extermal) GAP
CELBpts cellobiose transport via PEP:Pyr PTS GAP
CHORS chorismate synthase GAP
CHTBSptspp chitobiose transport via PEP:Pyr PTS (periplasm) GAP
CINNDO Cinnamate dioxygenase GAP
CPPPGO coproporphyrinogen oxidase (O2 required) GAP
CYSS_2 cysteine synthase GAP
CYTDt2pp cytidine transport in via proton symport (periplasm) GAP
DDCAtexi Fatty acid (dodecanoate) transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
DHAPT Dihydroxyacetone phosphotransferase GAP
DHCIND 2,3-dihydroxycinnamate dehydrogenase GAP
DHDPS dihydrodipicolinate synthase GAP
DHFS dihydrofolate synthase GAP
DHNCOAS 1,4-dihydroxy-2-napthoyl-CoA synthase GAP
DHPPD 2,3-dihydroxyphenylpropionate dehydrogenase GAP
DHPTPE dihydroneopterin triphosphate 2'-epimerase GAP
DXYLTD D-xylonate dehydratase GAP
__Ecoli_panGEMs__ECA4OALpp Enterobacterial common antigen (x4) O-antigen ligase (periplasm) GAP
__Ecoli_panGEMs__EDTXS3 Endotoxin Synthesis (palmitoleoyl ACP) GAP
ETHAAL Ethanolamine ammonia-lyase GAP
FE2t2pp iron (II) transport in via proton symport (periplasm) GAP
FORCT Formyl-CoA Transferase GAP
FRUpts2pp Fructose transport via PEP:Pyr PTS (f6p generating) (periplasm) GAP
FRUptspp D-fructose transport via PEP:Pyr PTS (periplasm) GAP
G2PP glycerol-2-phosphate phosphatase GAP
__Ecoli_panGEMs__GALT1 Galactosyltransferase I (LPS core synthesis) GAP
GALTptspp Galactitol transport via PEP:Pyr PTS (periplasm) GAP
GAMptspp D-glucosamine transport via PEP:Pyr PTS (periplasm) GAP
GARFT phosphoribosylglycinamide formyltransferase GAP
GDPMNP GDP-mannose phyrophosphatase GAP
GHMT2r glycine hydroxymethyltransferase, reversible GAP
GLCptspp D-glucose transport via PEP:Pyr PTS (periplasm) GAP
__Ecoli_panGEMs__GLCTR2 Glucosyltransferase II (LPS core synthesis) GAP
__Ecoli_panGEMs__GLCTR3 Glucosyltransferase III (LPS core synthesis) GAP
GLTPD Galactitol-1-phosphate dehydrogenase GAP
GLUPRT glutamine phosphoribosyldiphosphate amidotransferase GAP
__Ecoli_panGEMs__GLUTRS Glutamyl-tRNA synthetase GAP
GMPS GMP synthase GAP
GMPS2 GMP synthase GAP
HCYSMT homocysteine S-methyltransferase GAP
HCYSMT2 Homocysteine Methyltransferase GAP
HDCAtexi Hexadecanoate transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
HDCEAtexi Hexadecenoate transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
__Ecoli_panGEMs__HEPK2 LPS heptose kinase II (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPT4 Heptosyltransferase IV (LPS core synthesis) GAP
HEX1 hexokinase (D-glucose:ATP) GAP
HISabcpp L-histidine transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__I2FE2SR ISC [2Fe-2S] regeneration GAP
__Ecoli_panGEMs__I2FE2SS ISC [2Fe-2S] Synthesis GAP
__Ecoli_panGEMs__I2FE2SS2 ISC [2Fe-2S] Synthesis II GAP
__Ecoli_panGEMs__I2FE2ST ISC [2Fe-2S] Transfer GAP
__Ecoli_panGEMs__I4FE4SR ISC [4Fe-4S] Reduction GAP
__Ecoli_panGEMs__I4FE4ST ISC [4Fe-4S] Transfer GAP
ICHORS isochorismate synthase GAP
__Ecoli_panGEMs__ICYSDS ISC Cysteine desulfuration GAP
IDOND L-idonate 5-dehydrogenase GAP
IDOND2 L-indonate 5-dehydrogenase (NADP) GAP
IDONt2rpp L-idonate transport via proton symport, reversible (periplasm) GAP
IMPD IMP dehydrogenase GAP
__Ecoli_panGEMs__LA4NTpp 4-amino-4-deoxy-L-arabinotransferase (LPS lipid A modification, periplasmic face of membrane)) GAP
LYSabcpp L-lysine transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__MACPD Malonyl-ACP decarboxylase GAP
MALTptspp maltose transport via PEP:Pyr PTS (periplasm) GAP
MANGLYCptspp 2-O-alpha-mannosyl-D-glycerate transport via PEP:Pyr PTS (periplasm) GAP
MANptspp D-mannose transport via PEP:Pyr PTS (periplasm) GAP
MCPST 3-mercaptopyruvate sulfurtransferase GAP
ME1 malic enzyme (NAD) GAP
ME2 malic enzyme (NADP) GAP
__Ecoli_panGEMs__MECDPDH5 2C-methyl-D-erythritol 2,4 cyclodiphosphate dehydratase GAP
MEPNabcpp methylpshophonic acid abc transporter GAP
MI1PP myo-inositol 1-phosphatase GAP
__Ecoli_panGEMs__MLDEP1pp Murein L,D-endopeptidase (murein3px3p) (periplasm) GAP
__Ecoli_panGEMs__MLDEP2pp Murein L,D-endopeptidase (murein5px3p) (periplasm) GAP
MMETt2pp S-methylmethionine permease (periplasm) GAP
MNLptspp mannitol transport via PEP:Pyr PTS (periplasm) GAP
MNt2pp manganese (Mn+2) transport in via proton symport (periplasm) GAP
__Ecoli_panGEMs__MOADSUx MoaD sulfuration (nadh, assumed) GAP
__Ecoli_panGEMs__MOAT3C 3-deoxy-D-manno-octulosonic acid transferase III (LPS core biosynthesis) GAP
NADH17pp NADH dehydrogenase (menaquinone-8 & 3 protons) (periplasm) GAP
NADH18pp NADH dehydrogenase (demethylmenaquinone-8 & 3 protons) (periplasm) GAP
NODOx nitric oxide dioxygenase GAP
NODOy nitric oxide dioxygenase GAP
__Ecoli_panGEMs__O16A4Lpp O16 anitgen (x4) ligase (periplasm) GAP
__Ecoli_panGEMs__O16AP1pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP2pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP3pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AT Rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate O-acetyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AUNDtpp O16 antigen (flippase, cytoplasm to periplasm) GAP
__Ecoli_panGEMs__O16GALFT Galactofuranosyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16GLCT1 Glucosyltransferase I (LPS O16 antigen biosynthesis) GAP
OCDCAtexi Octadecanoate transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
OCDCEAtexi Octadecenoate (n-C18:1) transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
__Ecoli_panGEMs__OPMEACPS 3-Oxo-pimeloyl-[ACP] methyl ester synthase GAP
ORNabcpp ornithine transport via ABC system (periplasm) GAP
OXCDC Oxalyl-CoA decarboxylase GAP
PDX5PS Pyridoxine 5'-phosphate synthase GAP
PERD Erythronate 4-phosphate (4per) dehydrogenase GAP
PPK polyphosphate kinase GAP
PPK2 polyphosphate kinase GAP
PPPNDO Phenylpropanoate Dioxygenase GAP
PPPNt2rpp 3-phenylpropionate transport via proton symport, reversible (periplasm) GAP
__Ecoli_panGEMs__PRAIS Phosphoribosylaminoimidazole synthase GAP
PRASCSi phosphoribosylaminoimidazolesuccinocarboxamide synthase GAP
PRFGS phosphoribosylformylglycinamidine synthase GAP
__Ecoli_panGEMs__PSSA120 Phosphatidylserine syntase (n-C12:0) GAP
__Ecoli_panGEMs__PSSA140 Phosphatidylserine syntase (n-C14:0) GAP
__Ecoli_panGEMs__PSSA141 Phosphatidylserine syntase (n-C14:1) GAP
__Ecoli_panGEMs__PSSA160 Phosphatidylserine syntase (n-C16:0) GAP
__Ecoli_panGEMs__PSSA161 Phosphatidylserine syntase (n-C16:1) GAP
__Ecoli_panGEMs__PSSA180 Phosphatidylserine syntase (n-C18:0) GAP
__Ecoli_panGEMs__PSSA181 Phosphatidylserine syntase (n-C18:1) GAP
PTA2 Phosphate acetyltransferase GAP
PTAr phosphotransacetylase GAP
__Ecoli_panGEMs__PUACGAMS Poly-?-1,6-N-acetyl-D-glucosamine synthase GAP
__Ecoli_panGEMs__PUACGAMtr Transport of poly-?-1,6-N-acetyl-D-glucosamine (poly-?-1,6-N-acetyl-D-glucosamine synthase) GAP
PUNP7 purine-nucleoside phosphorylase (Xanthosine) GAP
ATPX5P pyridoxamine kinase GAP
PYDXNK pyridoxine kinase GAP
__Ecoli_panGEMs__RHAT1 Rhamnosyltransferase I (LPS core biosynthesis) GAP
RU5PP Ribulose-5-Phosphate Phosphatase GAP
SBTptspp D-sorbitol transport via PEP:Pyr PTS (periplasm) GAP
SDPDS succinyl-diaminopimelate desuccinylase GAP
SELabcpp selenatenate transport via ABC system (periplasm) GAP
SEPHCHCS 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase GAP
SERD_D D-serine deaminase GAP
SHCHCS3 2-succinyl-6-hydroxy-2,4-cyclohexadiene 1-carboxylate synthase GAP
SLNTabcpp selenite ABC transporter (periplasm) GAP
SO4t2pp sulfate transport in via proton symport (periplasm to cytoplasm) GAP
SUCBZL o-succinylbenzoate-CoA ligase GAP
SUCBZS O-succinylbenzoate-CoA synthase GAP
SUCptspp sucrose transport via PEP:Pyr (periplasm) GAP
TDPDRE dTDP-4-dehydrorhamnose 3,5-epimerase GAP
THFAT Aminomethyltransferase GAP
THMDt2pp thymidine transport in via proton symport (periplasm) GAP
__Ecoli_panGEMs__THZPSN3 Thiazole phosphate synthesis GAP
TREptspp trehalose transport via PEP:Pyr PTS (periplasm) GAP
__Ecoli_panGEMs__TSULabcpp Thiosulfate transport via ABC system (periplasm) GAP
TTDCAtexi Tetradecanoate transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
TTDCEAtexi Tetradecenoate transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
UDPGALM UDPgalactopyranose mutase GAP
UDPGDC UDP-glucuronate C-4'' decarboxylase GAP
UDPKAAT UDP-4''-ketopentose:UDP-4-amino-4-deoxy-L-arabinose aminotransferase GAP
ULA4NFT UDP-L-Ara4N formyltransferase GAP
__Ecoli_panGEMs__ULA4Ntppi Transport (cytoplasm to periplasm) GAP
__Ecoli_panGEMs__UPLA4FNF Undecaprenyl phosphate-L-Ara4FN formylase GAP
__Ecoli_panGEMs__UPLA4FNT Undecaprenyl phosphate-L-Ara4FN transferase GAP
UPPRT uracil phosphoribosyltransferase GAP
URIt2pp uridine transport in via proton symport (periplasm) GAP
XTSNt2rpp Xanthosine transport via proton symport (periplasm) GAP