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Gene
GAP
Associated reactions
  BiGG ID Name Gene reaction rule
ME1 malic enzyme (NAD) GAP
ALATA_L L-alanine transaminase GAP
CPPPGO coproporphyrinogen oxidase (O2 required) GAP
PTAr phosphotransacetylase GAP
CHORS chorismate synthase GAP
IMPD IMP dehydrogenase GAP
__Ecoli_panGEMs__GLUTRS Glutamyl-tRNA synthetase GAP
PUNP7 purine-nucleoside phosphorylase (Xanthosine) GAP
PYDXNK pyridoxine kinase GAP
ACCOAC acetyl-CoA carboxylase GAP
ICHORS isochorismate synthase GAP
SUCBZS O-succinylbenzoate-CoA synthase GAP
__Ecoli_panGEMs__EDTXS3 Endotoxin Synthesis (palmitoleoyl ACP) GAP
HCYSMT homocysteine S-methyltransferase GAP
__Ecoli_panGEMs__MACPD Malonyl-ACP decarboxylase GAP
CINNDO Cinnamate dioxygenase GAP
DHPPD 2,3-dihydroxyphenylpropionate dehydrogenase GAP
DHCIND 2,3-dihydroxycinnamate dehydrogenase GAP
GHMT2r glycine hydroxymethyltransferase, reversible GAP
GLTPD Galactitol-1-phosphate dehydrogenase GAP
SDPDS succinyl-diaminopimelate desuccinylase GAP
DHAPT Dihydroxyacetone phosphotransferase GAP
UDPGALM UDPgalactopyranose mutase GAP
TDPDRE dTDP-4-dehydrorhamnose 3,5-epimerase GAP
UPPRT uracil phosphoribosyltransferase GAP
IDOND L-idonate 5-dehydrogenase GAP
IDOND2 L-indonate 5-dehydrogenase (NADP) GAP
GMPS2 GMP synthase GAP
DHDPS dihydrodipicolinate synthase GAP
GLUPRT glutamine phosphoribosyldiphosphate amidotransferase GAP
CYSS_2 cysteine synthase GAP
GARFT phosphoribosylglycinamide formyltransferase GAP
PTA2 Phosphate acetyltransferase GAP
PDX5PS Pyridoxine 5'-phosphate synthase GAP
PRFGS phosphoribosylformylglycinamidine synthase GAP
ACM6PH N-acetylmuramate 6-phosphate hydrolase GAP
ETHAAL Ethanolamine ammonia-lyase GAP
MI1PP myo-inositol 1-phosphatase GAP
HEX1 hexokinase (D-glucose:ATP) GAP
ME2 malic enzyme (NADP) GAP
GMPS GMP synthase GAP
PPPNDO Phenylpropanoate Dioxygenase GAP
SUCptspp sucrose transport via PEP:Pyr (periplasm) GAP
__Ecoli_panGEMs__TSULabcpp Thiosulfate transport via ABC system (periplasm) GAP
AKGt2rpp 2-oxoglutarate reversible transport via symport (periplasm) GAP
THMDt2pp thymidine transport in via proton symport (periplasm) GAP
TREptspp trehalose transport via PEP:Pyr PTS (periplasm) GAP
URIt2pp uridine transport in via proton symport (periplasm) GAP
XTSNt2rpp Xanthosine transport via proton symport (periplasm) GAP
ACGAptspp N-Acetyl-D-glucosamine transport via PEP:Pyr PTS (periplasm) GAP
ACMANAptspp N-acetyl-D-mannosamine transport via PTS (periplasm) GAP
ADNt2pp adenosine transport in via proton symport (periplasm) GAP
__Ecoli_panGEMs__ASCBptspp L-ascorbate transport via PEP:Pyr PTS (periplasm) GAP
DHFS dihydrofolate synthase GAP
FRUptspp D-fructose transport via PEP:Pyr PTS (periplasm) GAP
SBTptspp D-sorbitol transport via PEP:Pyr PTS (periplasm) GAP
CYTDt2pp cytidine transport in via proton symport (periplasm) GAP
ASPO3 L-aspartate oxidase GAP
ASPO5 L-aspartate oxidase GAP
ASPO4 L-aspartate oxidase GAP
ASPO6 L-aspartate oxidase GAP
__Ecoli_panGEMs__O16GLCT1 Glucosyltransferase I (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AP2pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP3pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16A4Lpp O16 anitgen (x4) ligase (periplasm) GAP
PRASCSi phosphoribosylaminoimidazolesuccinocarboxamide synthase GAP
MCPST 3-mercaptopyruvate sulfurtransferase GAP
__Ecoli_panGEMs__ECA4OALpp Enterobacterial common antigen (x4) O-antigen ligase (periplasm) GAP
NODOy nitric oxide dioxygenase GAP
__Ecoli_panGEMs__GLCTR3 Glucosyltransferase III (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPT4 Heptosyltransferase IV (LPS core synthesis) GAP
__Ecoli_panGEMs__LA4NTpp 4-amino-4-deoxy-L-arabinotransferase (LPS lipid A modification, periplasmic face of membrane)) GAP
NODOx nitric oxide dioxygenase GAP
FE2t2pp iron (II) transport in via proton symport (periplasm) GAP
MANGLYCptspp 2-O-alpha-mannosyl-D-glycerate transport via PEP:Pyr PTS (periplasm) GAP
DDCAtexi Fatty acid (dodecanoate) transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
TTDCAtexi Tetradecanoate transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
HDCAtexi Hexadecanoate transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
MNLptspp mannitol transport via PEP:Pyr PTS (periplasm) GAP
ORNabcpp ornithine transport via ABC system (periplasm) GAP
IDONt2rpp L-idonate transport via proton symport, reversible (periplasm) GAP
OCDCAtexi Octadecanoate transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
OCDCEAtexi Octadecenoate (n-C18:1) transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
__Ecoli_panGEMs__O16AT Rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate O-acetyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16GALFT Galactofuranosyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AUNDtpp O16 antigen (flippase, cytoplasm to periplasm) GAP
__Ecoli_panGEMs__O16AP1pp O16 antigen polymerase (periplasm) GAP
HCYSMT2 Homocysteine Methyltransferase GAP
MMETt2pp S-methylmethionine permease (periplasm) GAP
HISabcpp L-histidine transport via ABC system (periplasm) GAP
LYSabcpp L-lysine transport via ABC system (periplasm) GAP
PPK2 polyphosphate kinase GAP
DHPTPE dihydroneopterin triphosphate 2'-epimerase GAP
GALTptspp Galactitol transport via PEP:Pyr PTS (periplasm) GAP
GLCptspp D-glucose transport via PEP:Pyr PTS (periplasm) GAP
PPPNt2rpp 3-phenylpropionate transport via proton symport, reversible (periplasm) GAP
__Ecoli_panGEMs__ACMUMptspp N-acetylmuramate transport via PEP:Pyr PTS (periplasm) GAP
PPK polyphosphate kinase GAP
CELBpts cellobiose transport via PEP:Pyr PTS GAP
MANptspp D-mannose transport via PEP:Pyr PTS (periplasm) GAP
UDPGDC UDP-glucuronate C-4'' decarboxylase GAP
MALTptspp maltose transport via PEP:Pyr PTS (periplasm) GAP
UDPKAAT UDP-4''-ketopentose:UDP-4-amino-4-deoxy-L-arabinose aminotransferase GAP
ULA4NFT UDP-L-Ara4N formyltransferase GAP
__Ecoli_panGEMs__UPLA4FNT Undecaprenyl phosphate-L-Ara4FN transferase GAP
__Ecoli_panGEMs__UPLA4FNF Undecaprenyl phosphate-L-Ara4FN formylase GAP
__Ecoli_panGEMs__ULA4Ntppi Transport (cytoplasm to periplasm) GAP
__Ecoli_panGEMs__MOAT3C 3-deoxy-D-manno-octulosonic acid transferase III (LPS core biosynthesis) GAP
MNt2pp manganese (Mn+2) transport in via proton symport (periplasm) GAP
__Ecoli_panGEMs__RHAT1 Rhamnosyltransferase I (LPS core biosynthesis) GAP
__Ecoli_panGEMs__GALT1 Galactosyltransferase I (LPS core synthesis) GAP
__Ecoli_panGEMs__GLCTR2 Glucosyltransferase II (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPK2 LPS heptose kinase II (LPS core synthesis) GAP
SUCBZL o-succinylbenzoate-CoA ligase GAP
__Ecoli_panGEMs__PRAIS Phosphoribosylaminoimidazole synthase GAP
__Ecoli_panGEMs__3OAS161 3-oxoacyl-[acyl-carrier-protein] synthase (n-C16:1) GAP
__Ecoli_panGEMs__PSSA140 Phosphatidylserine syntase (n-C14:0) GAP
__Ecoli_panGEMs__3OAS141 3-oxoacyl-[acyl-carrier-protein] synthase (n-C14:1) GAP
TTDCEAtexi Tetradecenoate transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
HDCEAtexi Hexadecenoate transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
SERD_D D-serine deaminase GAP
FRUpts2pp Fructose transport via PEP:Pyr PTS (f6p generating) (periplasm) GAP
GAMptspp D-glucosamine transport via PEP:Pyr PTS (periplasm) GAP
PERD Erythronate 4-phosphate (4per) dehydrogenase GAP
ATPX5P pyridoxamine kinase GAP
SO4t2pp sulfate transport in via proton symport (periplasm to cytoplasm) GAP
__Ecoli_panGEMs__PSSA180 Phosphatidylserine syntase (n-C18:0) GAP
__Ecoli_panGEMs__PSSA161 Phosphatidylserine syntase (n-C16:1) GAP
__Ecoli_panGEMs__PSSA141 Phosphatidylserine syntase (n-C14:1) GAP
__Ecoli_panGEMs__PSSA160 Phosphatidylserine syntase (n-C16:0) GAP
__Ecoli_panGEMs__PSSA181 Phosphatidylserine syntase (n-C18:1) GAP
__Ecoli_panGEMs__3OAS121 3-oxoacyl-[acyl-carrier-protein] synthase (n-C12:1) GAP
__Ecoli_panGEMs__MLDEP1pp Murein L,D-endopeptidase (murein3px3p) (periplasm) GAP
__Ecoli_panGEMs__MLDEP2pp Murein L,D-endopeptidase (murein5px3p) (periplasm) GAP
__Ecoli_panGEMs__PSSA120 Phosphatidylserine syntase (n-C12:0) GAP
NADH18pp NADH dehydrogenase (demethylmenaquinone-8 & 3 protons) (periplasm) GAP
5DGLCNt2rpp 5-Dehydro-D-gluconate transport via proton symport, reversible (periplasm) GAP
NADH17pp NADH dehydrogenase (menaquinone-8 & 3 protons) (periplasm) GAP
GDPMNP GDP-mannose phyrophosphatase GAP
OXCDC Oxalyl-CoA decarboxylase GAP
__Ecoli_panGEMs__OPMEACPS 3-Oxo-pimeloyl-[ACP] methyl ester synthase GAP
__Ecoli_panGEMs__MOADSUx MoaD sulfuration (nadh, assumed) GAP
__Ecoli_panGEMs__ICYSDS ISC Cysteine desulfuration GAP
__Ecoli_panGEMs__MECDPDH5 2C-methyl-D-erythritol 2,4 cyclodiphosphate dehydratase GAP
__Ecoli_panGEMs__I4FE4SR ISC [4Fe-4S] Reduction GAP
__Ecoli_panGEMs__I2FE2SS ISC [2Fe-2S] Synthesis GAP
__Ecoli_panGEMs__I2FE2ST ISC [2Fe-2S] Transfer GAP
__Ecoli_panGEMs__I2FE2SS2 ISC [2Fe-2S] Synthesis II GAP
__Ecoli_panGEMs__I4FE4ST ISC [4Fe-4S] Transfer GAP
THFAT Aminomethyltransferase GAP
SHCHCS3 2-succinyl-6-hydroxy-2,4-cyclohexadiene 1-carboxylate synthase GAP
DXYLTD D-xylonate dehydratase GAP
2DDARAA 2-dehydro-3-deoxy-D-arabinonate Aldolase GAP
2DGLCptspp 2-Deoxy-D-glucose transport via PEP:Pyr PTS (periplasm) GAP
ARBTptspp arbutin transport via PEP:Pyr PTS (periplasm) GAP
CHTBSptspp chitobiose transport via PEP:Pyr PTS (periplasm) GAP
G2PP glycerol-2-phosphate phosphatase GAP
ACOXT acetyl-CoA:oxalate CoA-transferase GAP
SELabcpp selenatenate transport via ABC system (periplasm) GAP
SEPHCHCS 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase GAP
DHNCOAS 1,4-dihydroxy-2-napthoyl-CoA synthase GAP
__Ecoli_panGEMs__PUACGAMtr Transport of poly-?-1,6-N-acetyl-D-glucosamine (poly-?-1,6-N-acetyl-D-glucosamine synthase) GAP
5DGLCNR 5-dehydro-D-gluconate reductase GAP
__Ecoli_panGEMs__PUACGAMS Poly-?-1,6-N-acetyl-D-glucosamine synthase GAP
RU5PP Ribulose-5-Phosphate Phosphatase GAP
CBL1tonex Cob(1)alamin transport via ton system (extermal) GAP
CBItonex Cobinamide transport via ton system (extermal) GAP
__Ecoli_panGEMs__I2FE2SR ISC [2Fe-2S] regeneration GAP
__Ecoli_panGEMs__THZPSN3 Thiazole phosphate synthesis GAP
ADOCBLtonex Adenosylcobalimin transport via ton system (extermal) GAP
MEPNabcpp methylpshophonic acid abc transporter GAP
FORCT Formyl-CoA Transferase GAP
SLNTabcpp selenite ABC transporter (periplasm) GAP