Search for any model, metabolite or reaction by BiGG ID or name.

To search for entries linked to external identifiers, use the format [namespace]:[identifier]. Possible namespaces are: (auto indicates the the enitity type is automatically derived from the identifier.)

  • CHEBI
    • Ex: CHEBI:17790
  • RHEA
    • Ex: RHEA:16505
  • InChIKey
    • The rightmost two parts of the InChIKey can optionally be omitted to search for compounds with different protonation states and different stereochemistries.
    • Ex: InChiKey:ZKHQWZAMYRWXGA-KQYNXXCUSA-J, InChiKey:ZKHQWZAMYRWXGA-KQYNXXCUSA, InChiKey:ZKHQWZAMYRWXGA-
  • EC / ec-code
    • Partial EC-codes can be provided, optionally with an asterix at the end.
    • Ex: ec-code:4.1.3.27, EC:4.1.3.*,
  • seed (auto), seed.compound, seed.reaction
    • Identifiers can also be entered directly.
    • Ex: cpd00023, seed:cpd00023, seed.reaction:rxn00126
  • kegg (auto), kegg.compound, kegg.reaction
    • Ex: kegg.compound:C00062, kegg:R01086
  • metacyc (auto), metacyc.compound, metacyc.reaction
    • Ex: metacyc:VAL, metacyc:BRANCHED-CHAINAMINOTRANSFERVAL-RXN
  • metanetx (auto), metanetx.chemical, metanetx.reaction
    • Identifiers can also be entered directly.
    • Ex: metanetx:MNXR100289, MNXR100289

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Gene
STM0413

STM0413

  • Model: STM_v1_0
Associated reactions
  BiGG ID Name Gene reaction rule
ADNtex adenosine transport via diffusion (extracellular to periplasm) STM0413
DADNtex deoxyadenosine transport via diffusion (extracellular to periplasm) STM0413
DCYTtex deoxycytidine transport via diffusion (extracellular to periplasm) STM0413
DURItex deoxyuridine transport via diffusion (extracellular to periplasm) STM0413
GUAtex Guanine transport via diffusion (extracellular to periplasm) STM0413
INStex inosine transport via diffusion (extracellular to periplasm) STM0413
URItex uridine transport via diffusion (extracellular to periplasm) STM0413