Search for any model, metabolite or reaction by BiGG ID or name.

To search for entries linked to external identifiers, use the format [namespace]:[identifier]. Possible namespaces are: (auto indicates the the enitity type is automatically derived from the identifier.)

  • CHEBI
    • Ex: CHEBI:17790
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    • Ex: RHEA:16505
  • InChIKey
    • The rightmost two parts of the InChIKey can optionally be omitted to search for compounds with different protonation states and different stereochemistries.
    • Ex: InChiKey:ZKHQWZAMYRWXGA-KQYNXXCUSA-J, InChiKey:ZKHQWZAMYRWXGA-KQYNXXCUSA, InChiKey:ZKHQWZAMYRWXGA-
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    • Ex: ec-code:4.1.3.27, EC:4.1.3.*,
  • seed (auto), seed.compound, seed.reaction
    • Identifiers can also be entered directly.
    • Ex: cpd00023, seed:cpd00023, seed.reaction:rxn00126
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    • Ex: kegg.compound:C00062, kegg:R01086
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    • Identifiers can also be entered directly.
    • Ex: metanetx:MNXR100289, MNXR100289

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Gene
STM1225

STM1225

  • Model: STM_v1_0
Associated reactions
  BiGG ID Name Gene reaction rule
PTRCabcpp putrescine transport via ABC system (periplasm) (STM0877 and STM0878 and STM0879 and STM0880) or (STM1226 and STM1225 and STM1223 and STM1222)
SPMDabcpp spermidine transport via ABC system (periplasm) STM1226 and STM1225 and STM1223 and STM1222