BiGG Gene STM2020

Search for any model, metabolite or reaction by BiGG ID or name.

To search for entries linked to external identifiers, use the format [namespace]:[identifier]. Possible namespaces are: (auto indicates the the enitity type is automatically derived from the identifier.)

CHEBI
- Ex: CHEBI:17790
RHEA
- Ex: RHEA:16505
InChIKey
- The rightmost two parts of the InChIKey can optionally be omitted to search for compounds with different protonation states and different stereochemistries.
- Ex: InChiKey:ZKHQWZAMYRWXGA-KQYNXXCUSA-J, InChiKey:ZKHQWZAMYRWXGA-KQYNXXCUSA, InChiKey:ZKHQWZAMYRWXGA-
EC / ec-code
- Partial EC-codes can be provided, optionally with an asterix at the end.
- Ex: ec-code:4.1.3.27, EC:4.1.3.*,
seed (auto), seed.compound, seed.reaction
- Identifiers can also be entered directly.
- Ex: cpd00023, seed:cpd00023, seed.reaction:rxn00126
kegg (auto), kegg.compound, kegg.reaction
- Ex: kegg.compound:C00062, kegg:R01086
metacyc (auto), metacyc.compound, metacyc.reaction
- Ex: metacyc:VAL, metacyc:BRANCHED-CHAINAMINOTRANSFERVAL-RXN
metanetx (auto), metanetx.chemical, metanetx.reaction
- Identifiers can also be entered directly.
- Ex: metanetx:MNXR100289, MNXR100289

BiGGr

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Models
STM_v1_0
Genes
STM2020

Gene

STM2020

STM2020

Model: STM_v1_0

Associated reactions

	BiGG ID	Name	Gene reaction rule
	Cobalt2abcppI	Cobalt transport via ABC system (periplasm)	STM2023 and STM2022 and STM2021 and STM2020