Search for any model, metabolite or reaction by BiGG ID or name.

To search for entries linked to external identifiers, use the format [namespace]:[identifier]. Possible namespaces are: (auto indicates the the enitity type is automatically derived from the identifier.)

  • CHEBI
    • Ex: CHEBI:17790
  • RHEA
    • Ex: RHEA:16505
  • InChIKey
    • The rightmost two parts of the InChIKey can optionally be omitted to search for compounds with different protonation states and different stereochemistries.
    • Ex: InChiKey:ZKHQWZAMYRWXGA-KQYNXXCUSA-J, InChiKey:ZKHQWZAMYRWXGA-KQYNXXCUSA, InChiKey:ZKHQWZAMYRWXGA-
  • EC / ec-code
    • Partial EC-codes can be provided, optionally with an asterix at the end.
    • Ex: ec-code:4.1.3.27, EC:4.1.3.*,
  • seed (auto), seed.compound, seed.reaction
    • Identifiers can also be entered directly.
    • Ex: cpd00023, seed:cpd00023, seed.reaction:rxn00126
  • kegg (auto), kegg.compound, kegg.reaction
    • Ex: kegg.compound:C00062, kegg:R01086
  • metacyc (auto), metacyc.compound, metacyc.reaction
    • Ex: metacyc:VAL, metacyc:BRANCHED-CHAINAMINOTRANSFERVAL-RXN
  • metanetx (auto), metanetx.chemical, metanetx.reaction
    • Identifiers can also be entered directly.
    • Ex: metanetx:MNXR100289, MNXR100289

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Gene
STM2282

STM2282

  • Model: STM_v1_0
Associated reactions
  BiGG ID Name Gene reaction rule
GPDDA1pp Glycerophosphodiester phosphodiesterase (Glycerophosphocholine) STM2282
GPDDA2pp Glycerophosphodiester phosphodiesterase (Glycerophosphoethanolamine) STM2282
GPDDA3pp Glycerophosphodiester phosphodiesterase (Glycerophosphoserine) STM2282
GPDDA4pp Glycerophosphodiester phosphodiesterase (Glycerophosphoglycerol) STM2282
GPDDA5pp Glycerophosphodiester phosphodiesterase (Glycerophosphoinositol) STM2282