Search for any model, metabolite or reaction by BiGG ID or name.

To search for entries linked to external identifiers, use the format [namespace]:[identifier]. Possible namespaces are: (auto indicates the the enitity type is automatically derived from the identifier.)

  • CHEBI
    • Ex: CHEBI:17790
  • RHEA
    • Ex: RHEA:16505
  • InChIKey
    • The rightmost two parts of the InChIKey can optionally be omitted to search for compounds with different protonation states and different stereochemistries.
    • Ex: InChiKey:ZKHQWZAMYRWXGA-KQYNXXCUSA-J, InChiKey:ZKHQWZAMYRWXGA-KQYNXXCUSA, InChiKey:ZKHQWZAMYRWXGA-
  • EC / ec-code
    • Partial EC-codes can be provided, optionally with an asterix at the end.
    • Ex: ec-code:4.1.3.27, EC:4.1.3.*,
  • seed (auto), seed.compound, seed.reaction
    • Identifiers can also be entered directly.
    • Ex: cpd00023, seed:cpd00023, seed.reaction:rxn00126
  • kegg (auto), kegg.compound, kegg.reaction
    • Ex: kegg.compound:C00062, kegg:R01086
  • metacyc (auto), metacyc.compound, metacyc.reaction
    • Ex: metacyc:VAL, metacyc:BRANCHED-CHAINAMINOTRANSFERVAL-RXN
  • metanetx (auto), metanetx.chemical, metanetx.reaction
    • Identifiers can also be entered directly.
    • Ex: metanetx:MNXR100289, MNXR100289

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Gene
STM2391

STM2391

  • Model: STM_v1_0
Associated reactions
  BiGG ID Name Gene reaction rule
DDCAtexi Fatty acid (dodecanoate) transport via facilitated irreversible diffusion (extracellular to periplasm) STM2391
HDCAtexi Hexadecanoate transport via facilitated irreversible diffusion (extracellular to periplasm) STM2391
HDCEAtexi Hexadecenoate transport via facilitated irreversible diffusion (extracellular to periplasm) STM2391
OCDCAtexi Octadecanoate transport via facilitated irreversible diffusion (extracellular to periplasm) STM2391
OCDCEAtexi Octadecenoate (n-C18:1) transport via facilitated irreversible diffusion (extracellular to periplasm) STM2391
TTDCAtexi Tetradecanoate transport via facilitated irreversible diffusion (extracellular to periplasm) STM2391
TTDCEAtexi Tetradecenoate transport via facilitated irreversible diffusion (extracellular to periplasm) STM2391
HDCAt2pp Hexadecanoate transport via proton symport STM2391