Search for any model, metabolite or reaction by BiGG ID or name.

To search for entries linked to external identifiers, use the format [namespace]:[identifier]. Possible namespaces are: (auto indicates the the enitity type is automatically derived from the identifier.)

  • CHEBI
    • Ex: CHEBI:17790
  • RHEA
    • Ex: RHEA:16505
  • InChIKey
    • The rightmost two parts of the InChIKey can optionally be omitted to search for compounds with different protonation states and different stereochemistries.
    • Ex: InChiKey:ZKHQWZAMYRWXGA-KQYNXXCUSA-J, InChiKey:ZKHQWZAMYRWXGA-KQYNXXCUSA, InChiKey:ZKHQWZAMYRWXGA-
  • EC / ec-code
    • Partial EC-codes can be provided, optionally with an asterix at the end.
    • Ex: ec-code:4.1.3.27, EC:4.1.3.*,
  • seed (auto), seed.compound, seed.reaction
    • Identifiers can also be entered directly.
    • Ex: cpd00023, seed:cpd00023, seed.reaction:rxn00126
  • kegg (auto), kegg.compound, kegg.reaction
    • Ex: kegg.compound:C00062, kegg:R01086
  • metacyc (auto), metacyc.compound, metacyc.reaction
    • Ex: metacyc:VAL, metacyc:BRANCHED-CHAINAMINOTRANSFERVAL-RXN
  • metanetx (auto), metanetx.chemical, metanetx.reaction
    • Identifiers can also be entered directly.
    • Ex: metanetx:MNXR100289, MNXR100289

BiGGr
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Gene
STM2409

STM2409

  • Model: STM_v1_0
Associated reactions
  BiGG ID Name Gene reaction rule
ADNt2pp adenosine transport in via proton symport (periplasm) STM3113 or STM2409
CYTDt2pp cytidine transport in via proton symport (periplasm) STM3113 or STM2409
DADNt2pp deoxyadenosine transport in via proton symport (periplasm) STM2409 or STM3113
DCYTt2pp deoxycytidine transport in via proton symport (periplasm) STM3113 or STM2409
DURIt2pp deoxyuridine transport in via proton symport (periplasm) STM2409 or STM3113
THMDt2pp thymidine transport in via proton symport (periplasm) STM3113 or STM2409
URIt2pp uridine transport in via proton symport (periplasm) STM3113 or STM2409