Search for any model, metabolite or reaction by BiGG ID or name.

To search for entries linked to external identifiers, use the format [namespace]:[identifier]. Possible namespaces are: (auto indicates the the enitity type is automatically derived from the identifier.)

  • CHEBI
    • Ex: CHEBI:17790
  • RHEA
    • Ex: RHEA:16505
  • InChIKey
    • The rightmost two parts of the InChIKey can optionally be omitted to search for compounds with different protonation states and different stereochemistries.
    • Ex: InChiKey:ZKHQWZAMYRWXGA-KQYNXXCUSA-J, InChiKey:ZKHQWZAMYRWXGA-KQYNXXCUSA, InChiKey:ZKHQWZAMYRWXGA-
  • EC / ec-code
    • Partial EC-codes can be provided, optionally with an asterix at the end.
    • Ex: ec-code:4.1.3.27, EC:4.1.3.*,
  • seed (auto), seed.compound, seed.reaction
    • Identifiers can also be entered directly.
    • Ex: cpd00023, seed:cpd00023, seed.reaction:rxn00126
  • kegg (auto), kegg.compound, kegg.reaction
    • Ex: kegg.compound:C00062, kegg:R01086
  • metacyc (auto), metacyc.compound, metacyc.reaction
    • Ex: metacyc:VAL, metacyc:BRANCHED-CHAINAMINOTRANSFERVAL-RXN
  • metanetx (auto), metanetx.chemical, metanetx.reaction
    • Identifiers can also be entered directly.
    • Ex: metanetx:MNXR100289, MNXR100289

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Gene
STM4306

STM4306

  • Model: STM_v1_0
Associated reactions
  BiGG ID Name Gene reaction rule
DMSOR1pp Dimethyl sulfoxide reductase (Menaquinol 8) (periplasm) (STM1499 and STM1498 and STM1497 and STM1496) or (STM0964 and STM0965 and STM0966) or (STM4305_S and STM4306 and STM4307) or (STM2528 and STM2530 and STM2529)
DMSOR2pp Dimethyl sulfoxide reductase (Demethylmenaquinol 8) (periplasm) (STM0964 and STM0965 and STM0966) or (STM4305_S and STM4306 and STM4307) or (STM2528 and STM2530 and STM2529)