- GDP-alpha-D-mannose(2-)
- Charge: -2
- Formula: C16H23N5O16P2
- Compartment: c - cytosol
- Universal Metabolite: gdpmann
- GDP-alpha-D-mannose(2-)
- Type: Small Molecule
- InChiKey: MVMSCBBUIHUTGJ-GDJBGNAASA-L
- View on ChEBI
Properties
- Molecular Mass||g/mol: 603.3252[0], 603.0[1]
- SMILES: Nc1nc(=O)c2ncn([C@@H]3O[C@H](COP(=O)([O-])OP(=O)([O-])O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O)[C@@H](O)[C@H]3O)c2n1[0], Nc1nc2c(ncn2C2O[C@H](COP(=O)([O-])OP(=O)([O-])O[C@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]3O)[C@@H](O)[C@H]2O)c(=O)[nH]1[1]
- Names: GDP-alpha-D-mannose[0,1], GDP-alpha-D-mannose dianion[0], guanosine 5'-[3-(alpha-D-mannopyranosyl) diphosphate][0], GDP-D-mannose[1], guanosine diphosphate mannose[1], guanosine diphosphomannose[1], guanosine pyrophosphate mannose[1], GDP-mannose[1]
MEMOTE Flags
A total of 46 (5.20%) metabolites are not consumed by any reaction of the model: tcynt_c, __iCN900__dhettp_c, __iCN900__btamp_c, __iCN900__lpteichoic_c, __iCN900__d12h5mtp_c, ...
Dead-ends are metabolites that can only be produced but not consumed by reactions in the model. They may indicate the presence of network and knowledge gaps. Implementation: Find dead-end metabolites structurally by considering only reaction equations and bounds. FBA is not carried out.
This model contains 735 unconserved metabolites: ahcys_c, xmp_c, gam6p_c, agm_c, alaala_c, ...
The list of unconserved metabolites is computed using the algorithm described in section 3.2 of "Detection of Stoichiometric Inconsistencies in Biomolecular Models." Bioinformatics 24, no. 19 (2008): 2245. doi: 10.1093/bioinformatics/btn425.
Reactions involving gdpmann_c in iCN900
| BiGG ID | Name | Reference | Transport | Collection-specific | Model | |
|---|---|---|---|---|---|---|
| BiGG ID | Name | Reference | Transport | Collection-specific | Model |