O2tex in iECIAI39_1322
- oxygen transport via diffusion (extracellular to periplasm)
- o2_e:0 ⇌ o2_p:0
- Bounds: (-1000.0, 1000.0)
- Universal Reaction: O2tex
Gene Reaction Rule
ECIAI39_0410 or ECIAI39_2218 or ECIAI39_1697 or ECIAI39_2352
MEMOTE Flags
This reaction was flagged in the following MEMOTE tests:
There are a total of 5 reversible oxygen-containing reactions (10.87% of all oxygen-containing reactions): O2tex, MOX, EX_o2_e, O2tpp, O2Stex
The directionality of oxygen-producing/-consuming reactions affects the model's ability to grow anaerobically i.e. create faux-anaerobic organisms. This test reports how many of these oxygen-containing reactions are reversible. This test does not have any mandatory 'pass' criteria. Implementation: First, find the metabolite representing atmospheric oxygen in the model on the basis of an internal mapping table or by specifically looking for the formula "O2". Then, find all reactions that produce or consume oxygen and report those that are reversible.