O2Stex in iECS88_1305
- superoxide anion transport via diffusion (extracellular to periplasm)
- o2s_e:-1 ⇌ o2s_p:-1
- Bounds: (-1000.0, 1000.0)
- Universal Reaction: O2Stex
Properties
- Names: superoxide anion transport via diffusion (extracellular to periplasm)[0], superoxide anion transport via diffusion[0,1,2,3,4], TRANS-RXNBWI-115401.ce.maizeexp.SUPER-OXIDE_SUPER-OXIDE[1], TRANS-RXNBWI-115401.cm.maizeexp.SUPER-OXIDE_SUPER-OXIDE[2], -[3,4]
Reaction Participants
| Stoich. | BiGG ID | Name | Reference | x [side] | Compartment | |
|---|---|---|---|---|---|---|
 |
-1 | o2s_e:-1 | superoxide | CHEBI:18421 | - | - |
 |
1 | o2s_p:-1 | superoxide | CHEBI:18421 | - | - |
Gene Reaction Rule
ECS88_1492 or ECS88_2364 or ECS88_0276 or ECS88_0957
| BiGG ID | Name | |
|---|---|---|
 |
ECS88_2364 | ECS88 2364 |
|
ECS88_0276 | ECS88 0276 |
|
ECS88_0957 | ECS88 0957 |
|
ECS88_1492 | ECS88 1492 |
MEMOTE Flags
This reaction was flagged in the following MEMOTE tests:
There are a total of 5 reversible oxygen-containing reactions (12.82% of all oxygen-containing reactions): O2Stex, EX_o2_e, O2tex, O2tpp, MOX
The directionality of oxygen-producing/-consuming reactions affects the model's ability to grow anaerobically i.e. create faux-anaerobic organisms. This test reports how many of these oxygen-containing reactions are reversible. This test does not have any mandatory 'pass' criteria. Implementation: First, find the metabolite representing atmospheric oxygen in the model on the basis of an internal mapping table or by specifically looking for the formula "O2". Then, find all reactions that produce or consume oxygen and report those that are reversible.