Search for any model, metabolite or reaction by BiGG ID or name.

To search for entries linked to external identifiers, use the format [namespace]:[identifier]. Possible namespaces are: (auto indicates the the enitity type is automatically derived from the identifier.)

  • CHEBI
    • Ex: CHEBI:17790
  • RHEA
    • Ex: RHEA:16505
  • InChIKey
    • The rightmost two parts of the InChIKey can optionally be omitted to search for compounds with different protonation states and different stereochemistries.
    • Ex: InChiKey:ZKHQWZAMYRWXGA-KQYNXXCUSA-J, InChiKey:ZKHQWZAMYRWXGA-KQYNXXCUSA, InChiKey:ZKHQWZAMYRWXGA-
  • EC / ec-code
    • Partial EC-codes can be provided, optionally with an asterix at the end.
    • Ex: ec-code:4.1.3.27, EC:4.1.3.*,
  • seed (auto), seed.compound, seed.reaction
    • Identifiers can also be entered directly.
    • Ex: cpd00023, seed:cpd00023, seed.reaction:rxn00126
  • kegg (auto), kegg.compound, kegg.reaction
    • Ex: kegg.compound:C00062, kegg:R01086
  • metacyc (auto), metacyc.compound, metacyc.reaction
    • Ex: metacyc:VAL, metacyc:BRANCHED-CHAINAMINOTRANSFERVAL-RXN
  • metanetx (auto), metanetx.chemical, metanetx.reaction
    • Identifiers can also be entered directly.
    • Ex: metanetx:MNXR100289, MNXR100289

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  5. ECs0516
Gene
ECs0516

ECs0516

  • Model: iECs_1301
Associated reactions
  BiGG ID Name Gene reaction rule
CMtpp Chloramphenicol transport via TolC system ECs0516 and ECs3332 and ECs3923
DOXRBCNtpp Doxorubicin transport via TolC system ECs0516 and ECs3332 and ECs3923
__iECx55__FUSAtpp Fusidic acid transport via TolC system ECs0516 and ECs3332 and ECs3923
MINCYCtpp Minocycline transport via TolC system ECs0516 and ECs3332 and ECs3923
NOVBCNtpp Novobiocin transport via TolC system ECs0516 and ECs3332 and ECs3923
RFAMPtpp Rifampin transport via TolC system ECs0516 and ECs3332 and ECs3923
TTRCYCtpp Tetracycline transport via TolC system ECs0516 and ECs3332 and ECs3923