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5mtr_c:0 in iEK1008
  • S-methyl-5-thio-D-ribofuranose
  • Charge: 0
  • Formula: C6H12O4S
  • Compartment: c - cytosol
  • Universal Metabolite: 5mtr
CHEBI:78440
  • S-methyl-5-thio-D-ribofuranose
  • Type: Small Molecule
  • InChiKey: OLVVOVIFTBSBBH-JDJSBBGDSA-N
  • View on ChEBI
Properties
  • Molecular Mass||g/mol: 180.222[0], 180.0[1]
  • SMILES: CSC[C@H]1OC(O)[C@H](O)[C@@H]1O[0,1]
  • Names: 5-methylthio-D-ribose[0,1], 5-methylthioribose[0,1], S-Methyl-5-thio-D-ribose[0,1], 5-S-methyl-5-thio-D-ribofuranose[0], 5-(methylsulfanyl)-D-ribose[0], 5-Methylthio-D-ribose[1], 5-(methylsulfanyl)-alpha-D-ribose[1], MTR[1], S-methyl-5-thio-D-ribofuranose[1], S-methyl-5-thio-D-ribose[1], methylthioribose[1]
Data Sources: [0] CHEBI:78440 via ChEBI, [1] cpd01981 via ModelSEED
Linkouts
Data Sources: [0] CHEBI:78440 via ChEBI, [1] cpd01981 via ModelSEED
MEMOTE Flags
This metabolite was flagged in the following MEMOTE tests:

A total of 44 (4.40%) metabolites are not consumed by any reaction of the model: rhcys_c, __iEK1008__btamp_c, glyb_c, __iEK1008__5odhf2a_c, __iEK1008__codhpre6_c, ...

Dead-ends are metabolites that can only be produced but not consumed by reactions in the model. They may indicate the presence of network and knowledge gaps. Implementation: Find dead-end metabolites structurally by considering only reaction equations and bounds. FBA is not carried out.

This model contains 774 unconserved metabolites: __iEK1008__nh4_c, __iEK1008__pre6b_c, __iEK1008__m1ocdca_c, __iEK1008__omtta_c, __iEK1008__accoa_c, ...

The list of unconserved metabolites is computed using the algorithm described in section 3.2 of "Detection of Stoichiometric Inconsistencies in Biomolecular Models." Bioinformatics 24, no. 19 (2008): 2245. doi: 10.1093/bioinformatics/btn425.

Reactions involving 5mtr_c in iEK1008
  BiGG ID Name Reference Transport Collection-specific Model
  BiGG ID Name Reference Transport Collection-specific Model